Variant report

Variant	nsv981884
Chromosome Location	chr8:91420804-91441125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91430244..91432970-chr8:91433981..91436818,2	MCF-7	breast:
2	chr8:91430244..91432970-chr8:91433981..91436818,2	MCF-7	breast:
3	chr8:91410413..91412914-chr8:91428801..91430946,2	MCF-7	breast:
4	chr8:91430122..91431884-chr8:91452416..91455104,2	MCF-7	breast:
5	chr8:91365455..91367802-chr8:91429981..91431804,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM64-4	chr8:91434573-91436368	NONHSAT127648

Extended variants
information (count: 623 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:623 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577913107	chr8:91420822-91420823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs545144218	chr8:91420856-91420857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529897409	chr8:91420866-91420867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527912930	chr8:91420879-91420880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549142502	chr8:91420886-91420887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs10216547	chr8:91420904-91420905	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs12545636	chr8:91420910-91420911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373426623	chr8:91420947-91420948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189007289	chr8:91420951-91420952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77795305	chr8:91420965-91420966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550163500	chr8:91420981-91420982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375868705	chr8:91420995-91420996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201004994	chr8:91421006-91421007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141489377	chr8:91421009-91421010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571270876	chr8:91421040-91421041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs369301235	chr8:91421054-91421055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs72357799	chr8:91421055-91421056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs59173425	chr8:91421056-91421057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199710757	chr8:91421057-91421058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371069329	chr8:91421058-91421059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201710937	chr8:91421059-91421060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs140617767	chr8:91421083-91421084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547551081	chr8:91421093-91421094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565760632	chr8:91421097-91421098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569749672	chr8:91421105-91421106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7837385	chr8:91421115-91421116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554819466	chr8:91421130-91421131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77103127	chr8:91421141-91421142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550378781	chr8:91421152-91421153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537355140	chr8:91421165-91421166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373589328	chr8:91421197-91421198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558569066	chr8:91421226-91421227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs578000382	chr8:91421254-91421255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs4734986	chr8:91421260-91421261	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs75544870	chr8:91421276-91421277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192350789	chr8:91421289-91421290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs60881518	chr8:91421295-91421296	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs561537344	chr8:91421382-91421383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145766418	chr8:91421402-91421403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs6995259	chr8:91421403-91421404	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs565426371	chr8:91421407-91421408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs78760484	chr8:91421430-91421431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547439355	chr8:91421441-91421442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565644990	chr8:91421451-91421452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs149207497	chr8:91421464-91421465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs548260065	chr8:91421486-91421487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs569879720	chr8:91421489-91421490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536844640	chr8:91421529-91421530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs551972799	chr8:91421535-91421536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs182609845	chr8:91421552-91421553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Epilepsy	20502679	CNVD
Breast cancer	20409316	CNVD
Acute myeloid leukemia	19651601	CNVD
head and neck squamous cell carcinoma	19451471	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Breast cancer	21611746	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91395000-91433400	Weak transcription	K562	blood
2	chr8:91439400-91439600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:91439400-91441000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:91440200-91440800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:91440400-91440800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:91440400-91441000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:91440600-91441000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:91440600-91441000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:91440600-91441000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:91441000-91445800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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