Variant report

Variant	nsv981942
Chromosome Location	chr8:58106497-58108694
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-8	chr8:58106444-58106570	ENSG00000253301.1
2	lnc-FAM110B-8	chr8:58106444-58106570	ENSG00000253301.1

Extended variants
information (count: 93 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:93 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369459259	chr8:58106505-58106506	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs371277952	chr8:58106512-58106513	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs575203694	chr8:58106579-58106580	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs61241336	chr8:58106585-58106586	Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs570430068	chr8:58106586-58106587	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs139173646	chr8:58106658-58106659	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs556137812	chr8:58106691-58106692	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs16921812	chr8:58106737-58106738	Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs562035357	chr8:58106750-58106751	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs555177887	chr8:58106804-58106805	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs2005392	chr8:58106896-58106897	Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs556032337	chr8:58106926-58106927	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs540295876	chr8:58106932-58106933	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs560220999	chr8:58106966-58106967	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs186425360	chr8:58106991-58106992	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs190868046	chr8:58107010-58107011	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs575598421	chr8:58107030-58107031	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs183685611	chr8:58107046-58107047	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs371591117	chr8:58107050-58107051	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs532062049	chr8:58107071-58107072	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs142143576	chr8:58107078-58107079	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs562240976	chr8:58107102-58107103	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs527906148	chr8:58107129-58107130	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs150142025	chr8:58107153-58107154	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs570531401	chr8:58107168-58107169	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs17194792	chr8:58107195-58107196	Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs549789294	chr8:58107198-58107199	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs561083554	chr8:58107222-58107223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs569835894	chr8:58107263-58107264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529284100	chr8:58107299-58107300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs535711591	chr8:58107320-58107321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558082533	chr8:58107351-58107352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555257686	chr8:58107419-58107420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs16921814	chr8:58107421-58107422	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs16921817	chr8:58107563-58107564	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs138624372	chr8:58107587-58107588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs376358987	chr8:58107592-58107593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201162672	chr8:58107610-58107611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs386725759	chr8:58107611-58107612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs73603871	chr8:58107612-58107613	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs562926292	chr8:58107653-58107654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs140243935	chr8:58107675-58107676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576382659	chr8:58107676-58107677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542509797	chr8:58107733-58107734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550929481	chr8:58107758-58107759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201705548	chr8:58107767-58107768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192940583	chr8:58107798-58107799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370886827	chr8:58107801-58107802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149322004	chr8:58107818-58107819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144650904	chr8:58107819-58107820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Sezary syndrome	18413736	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58106000-58107200	Active TSS	K562	blood
2	chr8:58106200-58114800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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