Variant report
Variant | nsv982114 |
---|---|
Chromosome Location | chr8:115214529-115225395 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs146924718 | chr8:115214535-115214536 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs137873776 | chr8:115214588-115214589 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs568076792 | chr8:115214612-115214613 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs535503208 | chr8:115214678-115214679 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs550406363 | chr8:115214687-115214688 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs11451873 | chr8:115214698-115214699 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs370853599 | chr8:115214707-115214708 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs568974527 | chr8:115214797-115214798 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs539241368 | chr8:115214907-115214908 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs557961072 | chr8:115214971-115214972 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs369810737 | chr8:115223845-115223846 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs150839549 | chr8:115223890-115223891 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs537745449 | chr8:115223932-115223933 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs553376462 | chr8:115223971-115223972 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs142681709 | chr8:115223979-115223980 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs373723141 | chr8:115223983-115223984 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs181248910 | chr8:115223984-115223985 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs186528519 | chr8:115224013-115224014 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs190946096 | chr8:115224030-115224031 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs34684761 | chr8:115224043-115224044 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs576154981 | chr8:115224143-115224144 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs182433704 | chr8:115224144-115224145 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs115160554 | chr8:115224194-115224195 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs532469903 | chr8:115224218-115224219 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs374638169 | chr8:115224345-115224346 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs187951134 | chr8:115224444-115224445 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs559495000 | chr8:115224447-115224448 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs72548427 | chr8:115224456-115224457 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs33937131 | chr8:115224457-115224458 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs201888562 | chr8:115224458-115224459 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs530160727 | chr8:115224470-115224471 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs370062649 | chr8:115224483-115224484 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs573978526 | chr8:115224499-115224500 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs548388052 | chr8:115224519-115224520 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs534864416 | chr8:115224574-115224575 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs140031138 | chr8:115224585-115224586 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs200855399 | chr8:115224642-115224643 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs71855223 | chr8:115224643-115224644 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs34676895 | chr8:115224644-115224645 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs201369323 | chr8:115224647-115224648 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs530996337 | chr8:115224654-115224655 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs190705369 | chr8:115224671-115224672 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs183271242 | chr8:115224692-115224693 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs532912225 | chr8:115224701-115224702 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs16885570 | chr8:115224718-115224719 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
46 | rs546736090 | chr8:115224741-115224742 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs145546792 | chr8:115224757-115224758 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs536292012 | chr8:115224762-115224763 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs554359367 | chr8:115224778-115224779 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs147728751 | chr8:115224794-115224795 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Gastric cancer | 17908304 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Seminomas | 18059402 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 17603634 | CNVD |
Testicular cancer | 18059402 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
abnormal development | 18461090 | CNVD |
Oral cancer | 21386901 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Langer-Giedion syndrome | 22283845 | CNVD |
Cancer | 21637783 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 20632083 | CNVD |
Breast cancer | 19602461 | CNVD |
Cancer | 22429812 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 19627613 | CNVD |
Prostate cancer | 21088497 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21264507 | CNVD |
Breast cancer | 22028636 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Cancer | 16751803 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Gastric cancer | 17167181 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 16461572 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
head and neck squamous cell carcinoma | 18028549 | CNVD |
Breast cancer | 17001317 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16608533 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Prostate cancer | 16573809 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Adenocarcinoma | 21044232 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Prostate cancer | 16461572 | CNVD |
Breast cancer | 21399628 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Breast cancer | 17393978 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Breast cancer | 17899364 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Autosomal-dominant progressive external ophthalmoplegia | 19664747 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Breast cancer | 21611746 | CNVD |
Developmental delay | 21147756 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Congenital diaphragmatic hernia | 21525063 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Breast cancer | 21364760 | CNVD |
Neuroticism | 17667963 | CNVD |
Papillary thyroid cancer | 17515504 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:115213400-115215000 | Enhancers | Dnd41 | blood |
2 | chr8:115223800-115225000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |