Variant report

Variant	nsv982610
Chromosome Location	chr9:7761314-7773033
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:7767607..7770435-chr9:7773162..7775185,2	K562	blood:
2	chr9:7772004..7774920-chr9:7780666..7782709,2	K562	blood:
3	chr9:7770682..7773341-chr9:7794081..7796235,2	MCF-7	breast:
4	chr9:7764096..7766786-chr9:7797842..7799916,2	MCF-7	breast:

Extended variants
information (count: 389 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:389 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193107187	chr9:7761395-7761396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183866687	chr9:7761404-7761405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs530554009	chr9:7761433-7761434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530529910	chr9:7761485-7761486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs76506891	chr9:7761507-7761508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs533014425	chr9:7761519-7761520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs151233677	chr9:7761553-7761554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528227171	chr9:7761558-7761559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188457949	chr9:7761580-7761581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551200492	chr9:7761610-7761611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141427848	chr9:7761626-7761627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543040363	chr9:7761627-7761628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs570189157	chr9:7761643-7761644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373041602	chr9:7761673-7761674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs563043059	chr9:7761705-7761706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs193040074	chr9:7761708-7761709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs73415594	chr9:7761731-7761732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570030114	chr9:7761733-7761734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537562342	chr9:7761802-7761803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555848973	chr9:7761833-7761834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557585080	chr9:7761869-7761870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs528996349	chr9:7761885-7761886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs184462990	chr9:7761898-7761899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553527657	chr9:7761905-7761906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs578207991	chr9:7761984-7761985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188775289	chr9:7762026-7762027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559287175	chr9:7762027-7762028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144627644	chr9:7762064-7762065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567950701	chr9:7762087-7762088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112386656	chr9:7762096-7762097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113968738	chr9:7762158-7762159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111258044	chr9:7762159-7762160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs10976557	chr9:7762166-7762167	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs75335511	chr9:7762169-7762170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs571567411	chr9:7762172-7762173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs6477230	chr9:7762216-7762217	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs10815673	chr9:7762239-7762240	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs533344089	chr9:7762261-7762262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550302020	chr9:7762264-7762265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532316818	chr9:7762285-7762286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs191762541	chr9:7762427-7762428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs570566204	chr9:7762447-7762448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117923626	chr9:7762480-7762481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs141671780	chr9:7762481-7762482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs183952276	chr9:7762510-7762511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs116795522	chr9:7762546-7762547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553331964	chr9:7762552-7762553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs578092165	chr9:7762607-7762608	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150420809	chr9:7762616-7762617	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs113970390	chr9:7762640-7762641	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7757200-7763000	Weak transcription	GM12878-XiMat	blood
2	chr9:7762600-7763200	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:7762800-7763200	Enhancers	Primary B cells from cord blood	blood
4	chr9:7763000-7763200	Enhancers	GM12878-XiMat	blood
5	chr9:7765000-7768800	Weak transcription	HSMMtube	muscle
6	chr9:7768800-7769400	Enhancers	HSMMtube	muscle
7	chr9:7769200-7769400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:7769400-7769800	Weak transcription	HSMMtube	muscle
9	chr9:7769800-7770600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:7769800-7771000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:7769800-7771000	Enhancers	HSMMtube	muscle
12	chr9:7770000-7770800	Enhancers	Fetal Lung	lung
13	chr9:7770200-7771000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:7770400-7770600	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:7770400-7770600	Enhancers	Brain Germinal Matrix	brain
16	chr9:7771200-7771400	Enhancers	Brain Germinal Matrix	brain

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