Variant report

Variant	nsv982644
Chromosome Location	chr9:22536420-22543422
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 236 )
Associated
traits (count: 154 )

Variant overlapped rSNPs/rCNVs (count:236 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528563346	chr9:22536421-22536422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542272789	chr9:22536430-22536431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182056270	chr9:22536487-22536488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs184446126	chr9:22536496-22536497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs550061531	chr9:22536503-22536504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs569756462	chr9:22536526-22536527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34075936	chr9:22536567-22536568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs1499556	chr9:22536570-22536571	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs150419123	chr9:22536605-22536606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs372770823	chr9:22536606-22536607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs189201842	chr9:22536617-22536618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs79701565	chr9:22536642-22536643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76030310	chr9:22536648-22536649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181650186	chr9:22536800-22536801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528623904	chr9:22536815-22536816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62572326	chr9:22536832-22536833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs7466514	chr9:22536836-22536837	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs149626838	chr9:22536853-22536854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs112707983	chr9:22536866-22536867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs186398712	chr9:22536879-22536880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557584960	chr9:22536891-22536892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75007446	chr9:22536894-22536895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs191183969	chr9:22536916-22536917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs118049786	chr9:22536935-22536936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573421727	chr9:22536956-22536957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs180702429	chr9:22536968-22536969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562075017	chr9:22537010-22537011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533110673	chr9:22537045-22537046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543762867	chr9:22537052-22537053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559291752	chr9:22537082-22537083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs117833318	chr9:22537091-22537092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548520448	chr9:22537099-22537100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570000912	chr9:22537123-22537124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2133529	chr9:22537142-22537143	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs147297011	chr9:22537165-22537166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs117774827	chr9:22537196-22537197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528210822	chr9:22537203-22537204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141057884	chr9:22537209-22537210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs77201594	chr9:22537218-22537219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs17756847	chr9:22537255-22537256	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs143292402	chr9:22537267-22537268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs116454636	chr9:22537268-22537269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs571153109	chr9:22537285-22537286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs539741649	chr9:22537318-22537319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs10118025	chr9:22537335-22537336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553572588	chr9:22537338-22537339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs2173562	chr9:22537360-22537361	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs567418235	chr9:22537461-22537462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535958298	chr9:22537467-22537468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs35105035	chr9:22537505-22537506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:154)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
Breast cancer	17142309	CNVD
Ependymoma	18628472	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-small cell lung cancer	16651412	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22533600-22539400	Weak transcription	Pancreas	Pancrea
2	chr9:22537400-22539000	Weak transcription	Liver	Liver
3	chr9:22539000-22540200	Strong transcription	Liver	Liver
4	chr9:22539400-22539600	ZNF genes & repeats	Pancreas	Pancrea
5	chr9:22540200-22541800	Weak transcription	Liver	Liver

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