Variant report

Variant	nsv982878
Chromosome Location	chr10:56422390-56425320
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576994209	chr10:56422823-56422824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs80262846	chr10:56422827-56422828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs75959929	chr10:56422843-56422844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs16906376	chr10:56422854-56422855	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs544251880	chr10:56422909-56422910	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs58016739	chr10:56422921-56422922	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs4347293	chr10:56422926-56422927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530028533	chr10:56422940-56422941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs201244271	chr10:56423452-56423453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561901286	chr10:56423453-56423454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs398114356	chr10:56423464-56423465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538690699	chr10:56423473-56423474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs112949387	chr10:56423484-56423485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533531282	chr10:56423528-56423529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs55990382	chr10:56423547-56423548	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs370369161	chr10:56423554-56423555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs577078232	chr10:56423570-56423571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546049156	chr10:56423592-56423593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs55688625	chr10:56423643-56423644	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs374493177	chr10:56423646-56423647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376492584	chr10:56423679-56423680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs544340290	chr10:56423711-56423712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112331227	chr10:56423761-56423762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181908414	chr10:56423779-56423780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574521463	chr10:56423867-56423868	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs184954613	chr10:56423898-56423899	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368496748	chr10:56423901-56423902	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs190879045	chr10:56423927-56423928	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11004439	chr10:56423968-56423969	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs150248549	chr10:56423976-56423977	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552792145	chr10:56423984-56423985	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368180234	chr10:56423994-56423995	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs397517451	chr10:56424007-56424008	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs372085398	chr10:56424015-56424016	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs137853001	chr10:56424016-56424017	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373830179	chr10:56424020-56424021	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573389436	chr10:56424023-56424024	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142016527	chr10:56424027-56424028	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368337958	chr10:56424045-56424046	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548331856	chr10:56424081-56424082	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568143764	chr10:56424103-56424104	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533849370	chr10:56424166-56424167	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113100345	chr10:56424206-56424207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117245042	chr10:56424292-56424293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs113820074	chr10:56424429-56424430	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539361821	chr10:56424434-56424435	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575273306	chr10:56424475-56424476	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374275816	chr10:56424527-56424528	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556030368	chr10:56424568-56424569	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs181230747	chr10:56424575-56424576	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56422800-56423000	Enhancers	Fetal Lung	lung
2	chr10:56423400-56428400	Weak transcription	Fetal Lung	lung
3	chr10:56423800-56424200	Enhancers	Fetal Kidney	kidney
4	chr10:56424400-56425200	Enhancers	Brain Germinal Matrix	brain
5	chr10:56424600-56425200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:56424600-56425600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links