Variant report

Variant	nsv982885
Chromosome Location	chr10:89962374-89966104
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89964521..89966509-chr10:89967760..89970508,2	K562	blood:

Extended variants
information (count: 141 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:141 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551772870	chr10:89962402-89962403	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs189273250	chr10:89962404-89962405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs566718150	chr10:89962447-89962448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs1789245	chr10:89962582-89962583	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs527789379	chr10:89962608-89962609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571222410	chr10:89962609-89962610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548471257	chr10:89962677-89962678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148792883	chr10:89962679-89962680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567416730	chr10:89962705-89962706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181032972	chr10:89962750-89962751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537687068	chr10:89962778-89962779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs523260	chr10:89962866-89962867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375857209	chr10:89962907-89962908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376976007	chr10:89962920-89962921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556067999	chr10:89962958-89962959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs118087624	chr10:89962960-89962961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544455310	chr10:89962981-89962982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs57759811	chr10:89963007-89963008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs55904530	chr10:89963011-89963012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12769207	chr10:89963013-89963014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199888339	chr10:89963017-89963018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs4434911	chr10:89963019-89963020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202065860	chr10:89963021-89963022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12769212	chr10:89963025-89963026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370678959	chr10:89963027-89963028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs184362083	chr10:89963029-89963030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs60737181	chr10:89963044-89963045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369578902	chr10:89963051-89963052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs369381127	chr10:89963052-89963053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77321884	chr10:89963053-89963054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs372859621	chr10:89963055-89963056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs376078205	chr10:89963068-89963069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372021949	chr10:89963073-89963074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369134497	chr10:89963074-89963075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377627178	chr10:89963076-89963077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373018852	chr10:89963081-89963082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371151971	chr10:89963091-89963092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs377044631	chr10:89963100-89963101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371316143	chr10:89963101-89963102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11202679	chr10:89963103-89963104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371142393	chr10:89963114-89963115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs112335583	chr10:89963117-89963118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373341971	chr10:89963122-89963123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111696774	chr10:89963127-89963128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12771566	chr10:89963131-89963132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12771573	chr10:89963137-89963138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs28521029	chr10:89963161-89963162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs71022521	chr10:89963165-89963166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs28406851	chr10:89963170-89963171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs28729410	chr10:89963172-89963173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:89955400-89962400	Weak transcription	Left Ventricle	heart
3	chr10:89955400-89963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:89955400-89965000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
6	chr10:89960800-89965600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:89961400-89964400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:89961600-89964600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:89961800-89964600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:89962400-89962600	Enhancers	Left Ventricle	heart
11	chr10:89963800-89964400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:89964400-89966200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:89964400-89969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:89964600-89964800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:89964600-89966000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:89964800-89965200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:89965000-89966200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:89965200-89967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:89965400-89966200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:89965600-89966000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:89965600-89966200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:89965600-89966200	Enhancers	Liver	Liver
23	chr10:89965600-89966400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:89965600-89966600	Enhancers	Fetal Lung	lung
25	chr10:89965800-89966000	Enhancers	Psoas Muscle	Psoas
26	chr10:89965800-89966000	Enhancers	GM12878-XiMat	blood
27	chr10:89965800-89966400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:89965800-89966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:89965800-89967200	Enhancers	Fetal Kidney	kidney
30	chr10:89966000-89966200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:89966000-89966200	Enhancers	HMEC	breast
32	chr10:89966000-89967600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:89966000-89969000	Weak transcription	Psoas Muscle	Psoas
34	chr10:89966000-89969000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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