Variant report

Variant	nsv982905
Chromosome Location	chr10:57501698-57508960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr10:57507840-57507889	K562	blood:	n/a	n/a
2	CEBPB	chr10:57507027-57507291	HepG2	liver:	n/a	n/a
3	CEBPB	chr10:57506975-57507448	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr10:57502180-57502330	Caco-2	colon:	n/a	n/a
5	FAM48A	chr10:57506843-57507037	GM12878	blood:	n/a	n/a
6	FOS	chr10:57506949-57507442	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:57506969-57507458	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr10:57507092-57507377	MCF10A-Er-Src	breast:	n/a	n/a
9	MAX	chr10:57507391-57507469	NB4	blood:	n/a	n/a
10	MXI1	chr10:57505473-57505500	K562	blood:	n/a	n/a
11	POLR2A	chr10:57508602-57508799	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:57507593-57507672	GM12878	blood:	n/a	n/a
13	SPI1	chr10:57502306-57502571	GM12891	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
14	SPI1	chr10:57502359-57502518	K562	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
15	SPI1	chr10:57502329-57502529	GM12891	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
16	SPI1	chr10:57502279-57502592	HL-60	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
17	SPI1	chr10:57502294-57502559	GM12878	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
18	SPI1	chr10:57502300-57502597	HL-60	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
19	SPI1	chr10:57502112-57502737	GM12878	blood:	n/a	chr10:57502446-57502459 chr10:57502447-57502456 chr10:57502445-57502458
20	STAT3	chr10:57507169-57507452	MCF10A-Er-Src	breast:	n/a	chr10:57507322-57507345
21	STAT3	chr10:57506943-57507494	MCF10A-Er-Src	breast:	n/a	chr10:57507322-57507345
22	STAT3	chr10:57506890-57507498	MCF10A-Er-Src	breast:	n/a	chr10:57507322-57507345
23	STAT3	chr10:57506967-57507496	MCF10A-Er-Src	breast:	n/a	chr10:57507322-57507345
24	USF1	chr10:57502058-57502270	SK-N-SH_RA	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-5	chr10:57506311-57506668	NONHSAT013465

Variant related genes	Relation type
ENSG00000270541	TF binding region

Extended variants
information (count: 238 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:238 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531640625	chr10:57501729-57501730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs4568907	chr10:57501753-57501754	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs142360075	chr10:57501790-57501791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4275527	chr10:57501798-57501799	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs189744645	chr10:57501847-57501848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs543958985	chr10:57501852-57501853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182193490	chr10:57501860-57501861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528194277	chr10:57501874-57501875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551490869	chr10:57501906-57501907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs10825595	chr10:57501952-57501953	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs10825596	chr10:57501959-57501960	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs10825597	chr10:57501965-57501966	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs570376444	chr10:57502004-57502005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs145848929	chr10:57502015-57502016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555706949	chr10:57502045-57502046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs10763254	chr10:57502078-57502079	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs534791458	chr10:57502090-57502091	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs116697330	chr10:57502137-57502138	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs148165392	chr10:57502148-57502149	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs544555397	chr10:57502152-57502153	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs142028571	chr10:57502180-57502181	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs185840500	chr10:57502198-57502199	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs150662913	chr10:57502223-57502224	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs139911699	chr10:57502246-57502247	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs559259030	chr10:57502331-57502332	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs76188833	chr10:57502377-57502378	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs1916557	chr10:57502390-57502391	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs76032638	chr10:57502438-57502439	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs530481096	chr10:57502460-57502461	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs550613736	chr10:57502472-57502473	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs368227784	chr10:57502544-57502545	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs191384703	chr10:57502578-57502579	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs34806995	chr10:57502614-57502615	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs183438834	chr10:57502695-57502696	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs1916556	chr10:57502704-57502705	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs188499388	chr10:57502710-57502711	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs149369383	chr10:57502753-57502754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs193113190	chr10:57502774-57502775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372228212	chr10:57502823-57502824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs183139212	chr10:57502830-57502831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537012127	chr10:57502919-57502920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1916555	chr10:57502930-57502931	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs147487301	chr10:57502996-57502997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542550412	chr10:57503017-57503018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553280140	chr10:57503030-57503031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs1916554	chr10:57503035-57503036	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs116686814	chr10:57503047-57503048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs1916553	chr10:57503048-57503049	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs191410751	chr10:57503073-57503074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1916552	chr10:57503155-57503156	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57500800-57506800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:57501000-57506200	Weak transcription	Liver	Liver
3	chr10:57506200-57507400	Enhancers	Liver	Liver
4	chr10:57506400-57507600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:57506600-57507600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:57506600-57507600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:57506800-57507400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:57506800-57507400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:57506800-57507400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:57506800-57507600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:57506800-57507600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:57506800-57507600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:57506800-57507800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:57507000-57507600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links