Variant report

Variant	nsv982914
Chromosome Location	chr10:57105172-57111451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1900483	chr10:57108422-57108423	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs59979337	chr10:57108438-57108439	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs188567546	chr10:57108488-57108489	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs140683772	chr10:57108491-57108492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs143759910	chr10:57108501-57108502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs181100968	chr10:57108538-57108539	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563950651	chr10:57108551-57108552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs531442623	chr10:57108565-57108566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs114038279	chr10:57108610-57108611	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs554157671	chr10:57108623-57108624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs374101870	chr10:57108633-57108634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1900484	chr10:57108659-57108660	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs115794843	chr10:57108677-57108678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs113365850	chr10:57108686-57108687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs576860079	chr10:57108689-57108690	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545321884	chr10:57108691-57108692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565429404	chr10:57108698-57108699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs531243146	chr10:57108804-57108805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs190126983	chr10:57108807-57108808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs1900485	chr10:57108841-57108842	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs181750200	chr10:57108880-57108881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs113871145	chr10:57108924-57108925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs566893149	chr10:57108953-57108954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs72803897	chr10:57108985-57108986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs368772982	chr10:57111007-57111008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs189839822	chr10:57111025-57111026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs533074496	chr10:57111059-57111060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs201306869	chr10:57111062-57111063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs147491629	chr10:57111096-57111097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs114530405	chr10:57111152-57111153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs549125768	chr10:57111158-57111159	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs565621979	chr10:57111201-57111202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs534444261	chr10:57111224-57111225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs533409472	chr10:57111250-57111251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs554069149	chr10:57111261-57111262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs577466286	chr10:57111272-57111273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs138385502	chr10:57111287-57111288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556152352	chr10:57111333-57111334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs575998179	chr10:57111383-57111384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs377245992	chr10:57111410-57111411	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs541801841	chr10:57111416-57111417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs562246519	chr10:57111418-57111419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs572440647	chr10:57111423-57111424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs7077391	chr10:57111439-57111440	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57108400-57109000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:57108600-57109000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:57111000-57111800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:57111000-57112400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:57111200-57111600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:57111200-57111800	Enhancers	Brain Germinal Matrix	brain
7	chr10:57111400-57111800	Enhancers	HUES64 Cell Line	embryonic stem cell

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