Variant report

Variant	nsv982932
Chromosome Location	chr11:25891372-25897545
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 299 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566087257	chr11:25891383-25891384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs569048693	chr11:25891451-25891452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181353043	chr11:25891519-25891520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs139756962	chr11:25891547-25891548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs185530911	chr11:25891569-25891570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs533417687	chr11:25891583-25891584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191076307	chr11:25891614-25891615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551873573	chr11:25891621-25891622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113081203	chr11:25891630-25891631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549601081	chr11:25891639-25891640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs367812069	chr11:25891652-25891653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567805937	chr11:25891654-25891655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs532753147	chr11:25891671-25891672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186072522	chr11:25891672-25891673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556860835	chr11:25891697-25891698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs578169761	chr11:25891723-25891724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539082606	chr11:25891762-25891763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs149940759	chr11:25891766-25891767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs76566272	chr11:25891770-25891771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs539896654	chr11:25891848-25891849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561744162	chr11:25891876-25891877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2349596	chr11:25891877-25891878	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs538073066	chr11:25891904-25891905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs562830263	chr11:25891912-25891913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192056178	chr11:25891916-25891917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs34818897	chr11:25891933-25891934	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs572369609	chr11:25891940-25891941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs183185439	chr11:25891946-25891947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374088157	chr11:25891978-25891979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527795188	chr11:25892002-25892003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187447500	chr11:25892011-25892012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs16914785	chr11:25892018-25892019	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs568055208	chr11:25892062-25892063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs7109703	chr11:25892097-25892098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12418534	chr11:25892148-25892149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs571624671	chr11:25892158-25892159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs375798711	chr11:25892185-25892186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs2349597	chr11:25892186-25892187	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs571733367	chr11:25892220-25892221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs557336605	chr11:25892226-25892227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572466862	chr11:25892236-25892237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190310269	chr11:25892243-25892244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs116306268	chr11:25892355-25892356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573634711	chr11:25892359-25892360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs544429817	chr11:25892402-25892403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182558609	chr11:25892427-25892428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149124766	chr11:25892434-25892435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545282169	chr11:25892445-25892446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187163881	chr11:25892450-25892451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202208164	chr11:25892466-25892467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25886200-25898200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:25895000-25895200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:25897200-25898400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:25897400-25898600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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