Variant report

Variant	nsv982952
Chromosome Location	chr11:85172590-85181397
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85165504..85168134-chr11:85173876..85175824,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CREBZF-1	chr11:85180382-85180766	NONHSAT023435

Extended variants
information (count: 457 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:457 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370635264	chr11:85172614-85172615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs137889977	chr11:85172615-85172616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374755782	chr11:85172625-85172626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143434315	chr11:85172653-85172654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543598635	chr11:85172667-85172668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565244576	chr11:85172675-85172676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532386979	chr11:85172684-85172685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs191647207	chr11:85172695-85172696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183837184	chr11:85172728-85172729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528278034	chr11:85172732-85172733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529973554	chr11:85172750-85172751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540099923	chr11:85172776-85172777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561994951	chr11:85172785-85172786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547974890	chr11:85172799-85172800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529388108	chr11:85172819-85172820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529185270	chr11:85172824-85172825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs530583310	chr11:85172865-85172866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs7937119	chr11:85172871-85172872	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs188628005	chr11:85172939-85172940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550133312	chr11:85172947-85172948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534621001	chr11:85172976-85172977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553030086	chr11:85173027-85173028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566360769	chr11:85173047-85173048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147158298	chr11:85173058-85173059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555140241	chr11:85173091-85173092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576562369	chr11:85173093-85173094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs543865083	chr11:85173099-85173100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs180717346	chr11:85173103-85173104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs184487145	chr11:85173111-85173112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541011867	chr11:85173113-85173114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190538223	chr11:85173114-85173115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529938013	chr11:85173125-85173126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7939972	chr11:85173139-85173140	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs373649734	chr11:85173148-85173149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs530631609	chr11:85173156-85173157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552219321	chr11:85173157-85173158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11234347	chr11:85173189-85173190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150664187	chr11:85173250-85173251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546609490	chr11:85173251-85173252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568109172	chr11:85173287-85173288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536898088	chr11:85173298-85173299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548618674	chr11:85173343-85173344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182315540	chr11:85173376-85173377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372200488	chr11:85173380-85173381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537227391	chr11:85173432-85173433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs186923115	chr11:85173439-85173440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs532824220	chr11:85173447-85173448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs139913756	chr11:85173453-85173454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs534838849	chr11:85173454-85173455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552904568	chr11:85173480-85173481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
Obesity	20622171	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85163600-85173800	Weak transcription	Left Ventricle	heart
2	chr11:85171400-85182800	Weak transcription	Ovary	ovary
3	chr11:85175600-85175800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:85180400-85181000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:85180600-85180800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:85180600-85181800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:85180600-85181800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:85180600-85181800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:85180600-85181800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:85180600-85182800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:85180800-85183800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:85181000-85181800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:85181000-85182200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:85181200-85181800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links