Variant report

Variant	nsv982997
Chromosome Location	chr11:25607166-25610383
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:25607889-25608194	HepG2	liver:	n/a	n/a
2	FOS	chr11:25609155-25609369	MCF10A-Er-Src	breast:	n/a	chr11:25609317-25609326 chr11:25609317-25609325 chr11:25609318-25609325 chr11:25609316-25609326
3	FOS	chr11:25609170-25609433	MCF10A-Er-Src	breast:	n/a	chr11:25609317-25609326 chr11:25609317-25609325 chr11:25609318-25609325 chr11:25609316-25609326
4	MAFF	chr11:25607548-25607819	K562	blood:	n/a	chr11:25607677-25607695
5	MAFF	chr11:25607532-25607858	HepG2	liver:	n/a	chr11:25607677-25607695
6	MAFK	chr11:25607531-25607866	HepG2	liver:	n/a	n/a
7	MAFK	chr11:25607619-25607709	Hela-S3	cervix:	n/a	n/a
8	MAFK	chr11:25607593-25607839	HepG2	liver:	n/a	n/a
9	MAFK	chr11:25607623-25607757	K562	blood:	n/a	n/a
10	MAFK	chr11:25607529-25607826	IMR90	lung:	n/a	n/a
11	POLR2A	chr11:25609383-25609505	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr11:25608872-25608893	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC15-3	chr11:25609802-25609808	NONHSAT018446
2	lnc-MUC15-3	chr11:25610021-25610341	NONHSAT018448
3	lnc-MUC15-3	chr11:25609916-25610413	NONHSAT018446
4	lnc-MUC15-3	chr11:25610021-25610389	NONHSAT018447

Variant related genes	Relation type
RPL36AP40	TF binding region

Extended variants
information (count: 132 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:132 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532786494	chr11:25607197-25607198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs550990299	chr11:25607210-25607211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566545549	chr11:25607253-25607254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7120015	chr11:25607320-25607321	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs61897244	chr11:25607346-25607347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs61897245	chr11:25607348-25607349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145971439	chr11:25607356-25607357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552614195	chr11:25607357-25607358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs35554180	chr11:25607376-25607377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375089712	chr11:25607393-25607394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562839861	chr11:25607405-25607406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs57464844	chr11:25607447-25607448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs77897235	chr11:25607456-25607457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538096010	chr11:25607463-25607464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113956886	chr11:25607464-25607465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148339774	chr11:25607500-25607501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs141575947	chr11:25607511-25607512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553921474	chr11:25607554-25607555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572499812	chr11:25607558-25607559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542758951	chr11:25607559-25607560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561493114	chr11:25607599-25607600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs12808864	chr11:25607612-25607613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs56133730	chr11:25607622-25607623	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs565215371	chr11:25607654-25607655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs532701927	chr11:25607659-25607660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188083712	chr11:25607660-25607661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559937662	chr11:25607664-25607665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527330560	chr11:25607690-25607691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11028779	chr11:25607704-25607705	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs139272934	chr11:25607728-25607729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143814184	chr11:25607807-25607808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs192852531	chr11:25607817-25607818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147285452	chr11:25607823-25607824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs7104511	chr11:25607854-25607855	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs538984261	chr11:25607879-25607880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554088690	chr11:25607933-25607934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs183659741	chr11:25608020-25608021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs3958183	chr11:25608040-25608041	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs554788177	chr11:25608045-25608046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535860290	chr11:25608064-25608065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543593424	chr11:25608093-25608094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555289273	chr11:25608119-25608120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112065616	chr11:25608214-25608215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10444265	chr11:25608240-25608241	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs541360656	chr11:25608254-25608255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188000791	chr11:25608297-25608298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs2099905	chr11:25608308-25608309	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs542637995	chr11:25608311-25608312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192519399	chr11:25608326-25608327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531477711	chr11:25608344-25608345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25599600-25608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:25603000-25610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:25603000-25610200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:25608600-25609400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:25610000-25610400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:25610000-25610800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:25610200-25610600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:25610200-25610600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:25610200-25610800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:25610200-25610800	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links