Variant report

Variant	nsv983058
Chromosome Location	chr11:101342835-101343701
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534491191	chr11:101342848-101342849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs202073927	chr11:101342856-101342857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs190441617	chr11:101342859-101342860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376860273	chr11:101342860-101342861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200080118	chr11:101342883-101342884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192402680	chr11:101342909-101342910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145077205	chr11:101342931-101342932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs184304815	chr11:101342936-101342937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs558687240	chr11:101342937-101342938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs61743044	chr11:101342958-101342959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs542370698	chr11:101342966-101342967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs61739601	chr11:101342985-101342986	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs201155995	chr11:101342988-101342989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201874834	chr11:101342989-101342990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200154450	chr11:101342992-101342993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs202219188	chr11:101342999-101343000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200226540	chr11:101343017-101343018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs188810050	chr11:101343030-101343031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201524375	chr11:101343096-101343097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs181186200	chr11:101343134-101343135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534997911	chr11:101343161-101343162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536920224	chr11:101343169-101343170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs145869097	chr11:101343170-101343171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138335106	chr11:101343180-101343181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568737166	chr11:101343185-101343186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537525608	chr11:101343212-101343213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs60003016	chr11:101343267-101343268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567709448	chr11:101343268-101343269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533600887	chr11:101343284-101343285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11224779	chr11:101343362-101343363	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs577430512	chr11:101343412-101343413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540146990	chr11:101343422-101343423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143340953	chr11:101343438-101343439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534865801	chr11:101343445-101343446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75591943	chr11:101343478-101343479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375789412	chr11:101343510-101343511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs141546141	chr11:101343531-101343532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148362019	chr11:101343548-101343549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11224780	chr11:101343629-101343630	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs564522297	chr11:101343648-101343649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532280365	chr11:101343664-101343665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536474395	chr11:101343678-101343679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189039385	chr11:101343679-101343680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181636881	chr11:101343693-101343694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547879250	chr11:101343701-101343702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Melanoma	20877625	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101314400-101352800	Weak transcription	Aorta	Aorta
2	chr11:101330200-101361400	Weak transcription	Fetal Lung	lung
3	chr11:101337800-101368200	Weak transcription	Ovary	ovary
4	chr11:101339800-101349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:101342200-101343800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:101342200-101345400	Weak transcription	NHDF-Ad	bronchial
7	chr11:101342200-101357200	Weak transcription	NHLF	lung
8	chr11:101342800-101349200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links