Variant report

Variant	nsv983176
Chromosome Location	chr11:26931453-26935388
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:129 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192192775	chr11:26931456-26931457	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs527434221	chr11:26931524-26931525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs542773652	chr11:26931569-26931570	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs561398015	chr11:26931634-26931635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs531642245	chr11:26931648-26931649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569552845	chr11:26931667-26931668	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs148622258	chr11:26931679-26931680	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs571654964	chr11:26931697-26931698	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs532658225	chr11:26931702-26931703	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113723191	chr11:26931735-26931736	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs547645201	chr11:26931737-26931738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566635622	chr11:26931741-26931742	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565938468	chr11:26931800-26931801	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs536829219	chr11:26931809-26931810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs548822708	chr11:26931815-26931816	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs12279670	chr11:26931851-26931852	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs537475219	chr11:26931911-26931912	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs141553381	chr11:26931917-26931918	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs185785099	chr11:26931937-26931938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs577668708	chr11:26931949-26931950	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs74601856	chr11:26932032-26932033	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs150905226	chr11:26932135-26932136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs139661096	chr11:26932141-26932142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs144387175	chr11:26932146-26932147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146615113	chr11:26932150-26932151	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs576477153	chr11:26932162-26932163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs544726452	chr11:26932185-26932186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs552435746	chr11:26932238-26932239	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs369135050	chr11:26932241-26932242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs372894382	chr11:26932260-26932261	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs148285268	chr11:26932261-26932262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs58900151	chr11:26932274-26932275	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs11029738	chr11:26932280-26932281	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs35839126	chr11:26932281-26932282	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs11029739	chr11:26932282-26932283	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs551967474	chr11:26932284-26932285	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs149810033	chr11:26932415-26932416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs564946697	chr11:26932433-26932434	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs532327850	chr11:26932482-26932483	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs190209662	chr11:26932504-26932505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs145688859	chr11:26932524-26932525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs370935285	chr11:26932556-26932557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs139256920	chr11:26932592-26932593	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs530266807	chr11:26932680-26932681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs139882719	chr11:26932684-26932685	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs73442602	chr11:26932793-26932794	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs77073013	chr11:26932817-26932818	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs542259058	chr11:26932898-26932899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs148930354	chr11:26932909-26932910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs116087760	chr11:26932910-26932911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:26926400-26931600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:26927000-26931800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:26927200-26931800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:26927200-26932200	Weak transcription	Fetal Lung	lung
6	chr11:26927200-26936200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:26927400-26931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:26928000-26932000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:26930200-26933200	Enhancers	Colon Smooth Muscle	Colon
10	chr11:26931000-26933200	Enhancers	Liver	Liver
11	chr11:26931200-26933200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:26931600-26932800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr11:26931800-26932000	Enhancers	Stomach Smooth Muscle	stomach
14	chr11:26931800-26932800	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:26931800-26933000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:26932000-26932600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:26932000-26932600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:26932200-26933400	Enhancers	Fetal Lung	lung
19	chr11:26932800-26933000	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:26933000-26936600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:26933200-26936400	Weak transcription	Colon Smooth Muscle	Colon

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