Variant report

Variant	nsv983687
Chromosome Location	chr13:61557823-61567606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:61228579..61229262-chr13:61564112..61564627,2	MCF-7	breast:
2	chr13:61228265..61229223-chr13:61563982..61564725,3	MCF-7	breast:

Extended variants
information (count: 238 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:238 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536587020	chr13:61557832-61557833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34759926	chr13:61557877-61557878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535212143	chr13:61557950-61557951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74821375	chr13:61557964-61557965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565490738	chr13:61558045-61558046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144777263	chr13:61558070-61558071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542148553	chr13:61558147-61558148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148147313	chr13:61558173-61558174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370656134	chr13:61558174-61558175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543653387	chr13:61558183-61558184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192083074	chr13:61558226-61558227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576613158	chr13:61558318-61558319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574294956	chr13:61558333-61558334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368480602	chr13:61558338-61558339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541491906	chr13:61558374-61558375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs141877424	chr13:61558375-61558376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533141062	chr13:61558391-61558392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs78478570	chr13:61558418-61558419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74800501	chr13:61558420-61558421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs78624870	chr13:61558421-61558422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs76288559	chr13:61558422-61558423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs545419273	chr13:61558440-61558441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs302885	chr13:61558442-61558443	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs531677169	chr13:61558457-61558458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150644940	chr13:61558463-61558464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567872067	chr13:61558509-61558510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529054784	chr13:61558514-61558515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs547058649	chr13:61558550-61558551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs565780328	chr13:61558562-61558563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539043345	chr13:61558581-61558582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140668765	chr13:61558592-61558593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570246627	chr13:61558600-61558601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558644184	chr13:61558612-61558613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572605158	chr13:61558664-61558665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79671057	chr13:61558690-61558691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556100276	chr13:61558719-61558720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574256854	chr13:61558748-61558749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs144619740	chr13:61558779-61558780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557801365	chr13:61558787-61558788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs1504415	chr13:61558838-61558839	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs561928913	chr13:61558841-61558842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs554845730	chr13:61558845-61558846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs386379434	chr13:61558848-61558849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs71199044	chr13:61558851-61558852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114787311	chr13:61558886-61558887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs116777487	chr13:61558896-61558897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545069282	chr13:61558924-61558925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs181853935	chr13:61558995-61558996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530818047	chr13:61559005-61559006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374226741	chr13:61559042-61559043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Esophageal squamous carcinoma	20200074	CNVD
Myelofibrosis	22110671	CNVD
Anaplastic thyroid cancer	18753363	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61552800-61564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links