Variant report

Variant	nsv983728
Chromosome Location	chr13:85055175-85063727
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531643402	chr13:85055187-85055188	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs376572377	chr13:85055218-85055219	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs576541595	chr13:85055281-85055282	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571153751	chr13:85055289-85055290	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs533727577	chr13:85055292-85055293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs575760176	chr13:85055355-85055356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs112747927	chr13:85055378-85055379	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7994870	chr13:85055407-85055408	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs181101388	chr13:85055516-85055517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs575907700	chr13:85055539-85055540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs9319046	chr13:85055565-85055566	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs558488112	chr13:85055574-85055575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs17312796	chr13:85055615-85055616	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560230589	chr13:85055621-85055622	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540101454	chr13:85055642-85055643	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559289204	chr13:85055689-85055690	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540806196	chr13:85055733-85055734	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141055081	chr13:85055769-85055770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143119202	chr13:85055862-85055863	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148228534	chr13:85055864-85055865	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533145266	chr13:85055878-85055879	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562901666	chr13:85055893-85055894	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531602579	chr13:85055897-85055898	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9575588	chr13:85055918-85055919	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs200986522	chr13:85055931-85055932	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112423412	chr13:85055935-85055936	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs67298039	chr13:85055936-85055937	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10680943	chr13:85055938-85055939	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571190370	chr13:85055988-85055989	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs150302802	chr13:85056009-85056010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547212708	chr13:85056032-85056033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs563223262	chr13:85056048-85056049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs371976525	chr13:85056083-85056084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs567317184	chr13:85056121-85056122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs562432367	chr13:85056122-85056123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs536359626	chr13:85056168-85056169	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs76260881	chr13:85056203-85056204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs17078212	chr13:85056208-85056209	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs112999626	chr13:85056222-85056223	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs186942078	chr13:85056243-85056244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs191840837	chr13:85056292-85056293	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs36023075	chr13:85056305-85056306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs540893911	chr13:85056328-85056329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs143325030	chr13:85056333-85056334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs112013342	chr13:85056359-85056360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs543151133	chr13:85056360-85056361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs562828866	chr13:85056453-85056454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs138539234	chr13:85056482-85056483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs544978020	chr13:85056502-85056503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs564909161	chr13:85056521-85056522	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Epilepsy	20502679	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85045200-85055200	Weak transcription	Aorta	Aorta
2	chr13:85054000-85056000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:85054200-85055800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:85054800-85055400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:85055400-85055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:85055600-85056600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:85055800-85056400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:85055800-85056600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:85056000-85056600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:85056200-85056400	Enhancers	HMEC	breast
11	chr13:85056200-85056400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links