Variant report

Variant	nsv983876
Chromosome Location	chr14:19381777-19395585
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:19393162-19393294	LNCaP	prostate:	n/a	n/a
2	CTCF	chr14:19393115-19393321	LNCaP	prostate:	n/a	n/a
3	CTCF	chr14:19393051-19393418	K562	blood:	n/a	n/a
4	CTCF	chr14:19393033-19393400	K562	blood:	n/a	n/a
5	CTCF	chr14:19392910-19393469	A549	lung:	n/a	n/a
6	CTCF	chr14:19393010-19393378	A549	lung:	n/a	n/a
7	CTCF	chr14:19393052-19393293	K562	blood:	n/a	n/a
8	CTCF	chr14:19393147-19393287	Kidney_OC	kidney:	n/a	n/a
9	CTCF	chr14:19393519-19393611	A549	lung:	n/a	n/a
10	CTCF	chr14:19393007-19393424	A549	lung:	n/a	n/a
11	CTCF	chr14:19393162-19393281	Pancreas_OC	pancreas:	n/a	n/a
12	FOSL2	chr14:19393004-19393309	HepG2	liver:	n/a	n/a
13	FOSL2	chr14:19391896-19392284	HepG2	liver:	n/a	n/a
14	JUND	chr14:19392823-19393037	HepG2	liver:	n/a	n/a
15	JUND	chr14:19393064-19393323	HepG2	liver:	n/a	n/a
16	JUND	chr14:19393082-19393262	HepG2	liver:	n/a	n/a
17	JUND	chr14:19390887-19391068	HepG2	liver:	n/a	chr14:19391047-19391059
18	PAX5	chr14:19389281-19389438	GM12878	blood:	n/a	n/a
19	POU2F2	chr14:19392795-19393146	GM12878	blood:	n/a	n/a
20	RXRA	chr14:19392725-19393389	HepG2	liver:	n/a	n/a
21	RXRA	chr14:19381924-19382139	HepG2	liver:	n/a	n/a
22	RXRA	chr14:19389283-19389526	HepG2	liver:	n/a	n/a
23	RXRA	chr14:19390753-19391217	HepG2	liver:	n/a	n/a
24	RXRA	chr14:19393080-19393324	HepG2	liver:	n/a	n/a
25	SIX5	chr14:19392938-19393213	K562	blood:	n/a	n/a
26	SP1	chr14:19391713-19392055	GM12878	blood:	n/a	n/a
27	SP1	chr14:19392406-19392788	HepG2	liver:	n/a	n/a
28	USF1	chr14:19389718-19389868	HepG2	liver:	n/a	n/a
29	USF1	chr14:19394275-19394413	HepG2	liver:	n/a	n/a
30	ZBTB33	chr14:19392575-19392891	HepG2	liver:	n/a	n/a
31	ZBTB33	chr14:19391855-19392285	HepG2	liver:	n/a	n/a
32	ZBTB33	chr14:19393366-19393651	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000257672	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200075830	chr14:19389307-19389308	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs572276773	chr14:19389450-19389451	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs61969997	chr14:19389462-19389463	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs539695307	chr14:19389480-19389481	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs61969998	chr14:19389487-19389488	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs199576637	chr14:19389729-19389730	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs200610431	chr14:19389738-19389739	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs573626430	chr14:19390774-19390775	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs74580404	chr14:19390824-19390825	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs541135598	chr14:19390842-19390843	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs77704721	chr14:19390843-19390844	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs201890645	chr14:19390848-19390849	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs527876486	chr14:19390849-19390850	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cone-rod dystrophy	18421352	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Schizophrenia	20967226	CNVD
Autism	19287141	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	20932292	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	17142309	CNVD
Rett syndrome	21593744	CNVD
Breast cancer	20369283	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Incontinentia Pigmenti	22033527	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	21482944	CNVD
Mental retardation	19951919	CNVD
Neuroblastoma	21899760	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Esophageal cancer	20955586	CNVD
Neurodevelopmental disorder	22521361	CNVD
Lung cancer	16773561	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17440070	CNVD
Breast cancer	16272173	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Epilepsy	20736978	CNVD
Mental retardation	20736978	CNVD
severe speech impairment	20736978	CNVD
speech impairment	20736978	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Oligozoospermia	20877625	CNVD
Sertoli-cell only syndrome	20877625	CNVD
Ependymoma	20639864	CNVD
Williams Syndrome	20824207	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Bladder cancer	21909424	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links