Variant report

Variant	nsv984069
Chromosome Location	chr15:49772310-49783159
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COPS2-8	chr15:49781258-49781588	NONHSAT042380

No.	miRNA target gene	miRNA name	Chromosome Location
1	FGF7	hsa-miR-155-5p	chr15:49777589-49777610
2	FGF7	hsa-miR-155-5p	chr15:49776875-49776881
3	FGF7	hsa-miR-20a-5p	chr15:49778246-49778268
4	FGF7	hsa-miR-155-5p	chr15:49777603-49777610

Extended variants
information (count: 333 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:333 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192283700	chr15:49772327-49772328	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs145438374	chr15:49772386-49772387	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375968332	chr15:49772395-49772396	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs555384804	chr15:49772436-49772437	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs560866968	chr15:49772461-49772462	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs544156218	chr15:49772552-49772553	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs373065287	chr15:49772571-49772572	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs184071244	chr15:49772583-49772584	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs143682116	chr15:49772590-49772591	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs376628011	chr15:49772631-49772632	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs35283556	chr15:49772672-49772673	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs546014042	chr15:49772739-49772740	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs369324799	chr15:49772790-49772791	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs145777461	chr15:49772816-49772817	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs373075672	chr15:49772823-49772824	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs546726025	chr15:49772846-49772847	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs561719288	chr15:49772899-49772900	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs528918546	chr15:49772900-49772901	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs148193050	chr15:49772903-49772904	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs56248339	chr15:49772905-49772906	Strong transcription Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs539721210	chr15:49772922-49772923	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs551995845	chr15:49772956-49772957	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs377410158	chr15:49772981-49772982	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs566945198	chr15:49772995-49772996	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs141220015	chr15:49773001-49773002	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs150741014	chr15:49773072-49773073	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs573771179	chr15:49773097-49773098	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs537864856	chr15:49773162-49773163	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187806302	chr15:49773173-49773174	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs575524043	chr15:49773228-49773229	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189827714	chr15:49773351-49773352	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs545777894	chr15:49773417-49773418	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs182279117	chr15:49773487-49773488	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs573076344	chr15:49773498-49773499	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs139074606	chr15:49773537-49773538	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs561782392	chr15:49773588-49773589	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs34002493	chr15:49773591-49773592	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs545239263	chr15:49773672-49773673	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs560316066	chr15:49773681-49773682	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs562340478	chr15:49773700-49773701	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs533718675	chr15:49773712-49773713	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs551799569	chr15:49773725-49773726	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs374597384	chr15:49773729-49773730	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs76483200	chr15:49773746-49773747	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs111949817	chr15:49773801-49773802	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10851477	chr15:49773810-49773811	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs139763960	chr15:49773824-49773825	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs567455833	chr15:49773856-49773857	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537927920	chr15:49773862-49773863	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12913643	chr15:49773875-49773876	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Myelofibrosis	22110671	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49764800-49775200	Weak transcription	Osteobl	bone
3	chr15:49765800-49775800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:49765800-49783200	Weak transcription	NHDF-Ad	bronchial
5	chr15:49767600-49775200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:49771800-49773000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:49772200-49773800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:49773000-49775200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:49773800-49774200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:49774200-49775200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:49775200-49775600	Strong transcription	Osteobl	bone
12	chr15:49775200-49776400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:49775200-49777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:49775200-49781800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:49775600-49781000	Weak transcription	Osteobl	bone
16	chr15:49775800-49776000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:49776000-49776200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:49776200-49776400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:49776400-49777200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:49776400-49781600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:49777000-49777400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:49777200-49778400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:49777200-49788800	Weak transcription	Fetal Lung	lung
24	chr15:49777400-49779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:49778400-49787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:49779000-49780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:49780000-49781800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:49781000-49781800	Strong transcription	Osteobl	bone
29	chr15:49781600-49781800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:49781800-49782200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:49781800-49782400	Weak transcription	Osteobl	bone
32	chr15:49781800-49784600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:49781800-49789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:49782200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:49782400-49785600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links