Variant report

Variant	nsv984073
Chromosome Location	chr15:55473547-55474960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55470856..55473009-chr15:55473749..55475937,3	K562	blood:
2	chr15:55468427..55470541-chr15:55470610..55476298,5	K562	blood:
3	chr15:55473058..55474936-chr15:55475651..55479463,4	K562	blood:
4	chr15:55468607..55473383-chr15:55473749..55481384,11	K562	blood:
5	chr15:55473947..55475927-chr15:55477072..55479129,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIGB-2	chr15:55473443-55473581	ucscGeneNc_uc002aeh_2

No data

Extended variants
information (count: 71 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574789276	chr15:55473547-55473548	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs544136706	chr15:55473556-55473557	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs569859983	chr15:55473565-55473566	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs563690313	chr15:55473612-55473613	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577370930	chr15:55473615-55473616	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545952497	chr15:55473628-55473629	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538975327	chr15:55473631-55473632	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528629909	chr15:55473678-55473679	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556791757	chr15:55473737-55473738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs185845048	chr15:55473741-55473742	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs562109535	chr15:55473780-55473781	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192048127	chr15:55473785-55473786	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10438	chr15:55473805-55473806	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550056025	chr15:55473815-55473816	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569725691	chr15:55473826-55473827	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558704631	chr15:55473855-55473856	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183469646	chr15:55473864-55473865	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551988519	chr15:55473894-55473895	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs534459425	chr15:55473918-55473919	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554134944	chr15:55473923-55473924	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs149922510	chr15:55473926-55473927	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374388938	chr15:55473928-55473929	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77159420	chr15:55473937-55473938	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113590943	chr15:55473939-55473940	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs537299909	chr15:55473965-55473966	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557656206	chr15:55473989-55473990	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs188072191	chr15:55473999-55474000	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372593488	chr15:55474019-55474020	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs546361213	chr15:55474027-55474028	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560014253	chr15:55474082-55474083	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs573369853	chr15:55474096-55474097	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11540399	chr15:55474193-55474194	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs564276797	chr15:55474220-55474221	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562019218	chr15:55474245-55474246	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs11540385	chr15:55474246-55474247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143479241	chr15:55474270-55474271	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11540369	chr15:55474276-55474277	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs11540386	chr15:55474295-55474296	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11540388	chr15:55474296-55474297	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11540373	chr15:55474306-55474307	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369626781	chr15:55474309-55474310	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs563585818	chr15:55474345-55474346	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369049485	chr15:55474360-55474361	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11540387	chr15:55474374-55474375	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200847511	chr15:55474404-55474405	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs17852589	chr15:55474405-55474406	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs539153883	chr15:55474428-55474429	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551951434	chr15:55474466-55474467	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs373778784	chr15:55474467-55474468	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534793462	chr15:55474534-55474535	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:149 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55455800-55487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:55462600-55488600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:55463200-55474600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:55464800-55488200	Weak transcription	Lung	lung
5	chr15:55465400-55476600	Weak transcription	Brain Anterior Caudate	brain
6	chr15:55466800-55474000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:55466800-55474600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:55466800-55486800	Weak transcription	Psoas Muscle	Psoas
9	chr15:55467800-55480600	Weak transcription	Fetal Stomach	stomach
10	chr15:55468000-55482000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:55468200-55481600	Weak transcription	Fetal Intestine Small	intestine
12	chr15:55468600-55474600	Weak transcription	Brain Substantia Nigra	brain
13	chr15:55468800-55487000	Weak transcription	Gastric	stomach
14	chr15:55469000-55474400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:55469000-55477200	Strong transcription	Primary T cells from cord blood	blood
16	chr15:55469000-55481800	Weak transcription	Spleen	Spleen
17	chr15:55469200-55477200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:55469200-55484800	Strong transcription	Liver	Liver
19	chr15:55469200-55485000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr15:55469400-55478000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:55469400-55485200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:55469600-55474000	Weak transcription	Colonic Mucosa	Colon
23	chr15:55469600-55479600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:55469600-55485000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:55469600-55485200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:55469600-55486000	Strong transcription	Primary B cells from cord blood	blood
27	chr15:55469800-55477400	Strong transcription	Duodenum Mucosa	Duodenum
28	chr15:55469800-55477400	Strong transcription	Fetal Intestine Large	intestine
29	chr15:55469800-55477800	Strong transcription	HSMM	muscle
30	chr15:55469800-55484800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:55469800-55485000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:55469800-55486400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:55469800-55486600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:55470000-55477600	Strong transcription	Adipose Nuclei	Adipose
35	chr15:55470000-55484800	Strong transcription	Primary hematopoietic stem cells	blood
36	chr15:55470000-55484800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:55470200-55474000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:55470200-55475400	Weak transcription	NHEK	skin
39	chr15:55470200-55477800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:55470200-55479800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:55470200-55484000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:55470200-55486600	Weak transcription	Small Intestine	intestine
43	chr15:55470400-55474800	Weak transcription	Fetal Brain Male	brain
44	chr15:55470400-55475800	Strong transcription	A549	lung
45	chr15:55470400-55477200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:55470400-55477200	Strong transcription	Left Ventricle	heart
47	chr15:55470400-55477400	Strong transcription	GM12878-XiMat	blood
48	chr15:55470400-55477600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:55470400-55477800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr15:55470400-55480800	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links