Variant report

Variant	nsv984209
Chromosome Location	chr15:73098293-73108437
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73095998..73099016-chr15:73347374..73350745,4	MCF-7	breast:
2	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:
3	chr15:73074471..73077912-chr15:73094314..73098768,4	MCF-7	breast:
4	chr15:73095643..73098434-chr15:73099404..73102029,2	K562	blood:

Variant related genes	Relation type
ENSG00000159322	chromatin interactions
ENSG00000260898	chromatin interactions

Extended variants
information (count: 402 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:402 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532535912	chr15:73098325-73098326	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs192178303	chr15:73098327-73098328	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs572581485	chr15:73098432-73098433	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs146862544	chr15:73098453-73098454	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs542883844	chr15:73098486-73098487	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs561785705	chr15:73098509-73098510	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs373394396	chr15:73098552-73098553	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs573674907	chr15:73098568-73098569	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs543757015	chr15:73098570-73098571	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs562152184	chr15:73098623-73098624	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs61632994	chr15:73098638-73098639	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs60686620	chr15:73098639-73098640	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs184899939	chr15:73098643-73098644	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs67979110	chr15:73098648-73098649	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs61253039	chr15:73098651-73098652	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs199579190	chr15:73098652-73098653	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs551470115	chr15:73098654-73098655	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs58512256	chr15:73098655-73098656	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs188669880	chr15:73098658-73098659	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs59530712	chr15:73098685-73098686	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs560215559	chr15:73098710-73098711	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs8034155	chr15:73098820-73098821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs527447866	chr15:73098858-73098859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548928709	chr15:73098935-73098936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567706510	chr15:73098936-73098937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537964770	chr15:73099082-73099083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550340354	chr15:73099093-73099094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571667845	chr15:73099103-73099104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539066109	chr15:73099117-73099118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs8034552	chr15:73099156-73099157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs8035936	chr15:73099183-73099184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370673756	chr15:73099185-73099186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374374771	chr15:73099209-73099210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545845411	chr15:73099245-73099246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs367920449	chr15:73099269-73099270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554493557	chr15:73099328-73099329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566346990	chr15:73099400-73099401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs192316075	chr15:73099406-73099407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554865713	chr15:73099430-73099431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs528706470	chr15:73099438-73099439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543892750	chr15:73099454-73099455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555887045	chr15:73099512-73099513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577195889	chr15:73099515-73099516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs78982400	chr15:73099539-73099540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560367301	chr15:73099545-73099546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs527594371	chr15:73099547-73099548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542767023	chr15:73099560-73099561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs560917650	chr15:73099571-73099572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570210190	chr15:73099588-73099589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs184474224	chr15:73099597-73099598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Prostate cancer	16573809	CNVD
Autism	17322880	CNVD
Retinoblastoma	21504564	CNVD
Matthew-Wood syndrome	21085971	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Urothelial cell carcinoma	18451213	CNVD
phobic disorder	16773131	CNVD
Autism	21480499	CNVD
Disorders of sex development	22290220	CNVD
Mental retardation	19951919	CNVD
Mental retardation	16773131	CNVD
T-cell lymphomas	19863542	CNVD
15q24 microdeletion syndrome	22180641	CNVD
15q24 microdeletion syndrome	19921647	CNVD
Disease	22216833	CNVD
Mental retardation	17360722	CNVD
15q24 microdeletion syndrome	22216833	CNVD
15q24 microdeletion syndrome	22283845	CNVD
Developmental delay	17932688	CNVD
craniofacial dysmorphism	17932688	CNVD
digital and genital abnormalities	17932688	CNVD
Mental retardation	17621639	CNVD
Autism	20808228	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Epilepsy	22083797	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pancreatic cancer	17952125	CNVD
Acute lymphoblastic leukemia	20067559	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73097200-73098600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr15:73097200-73098600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:73097600-73099200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:73098200-73098400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:73098200-73098600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:73098600-73100600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:73098600-73101000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:73098600-73112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:73100600-73103000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:73100800-73103000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr15:73101000-73102200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:73101000-73102400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:73101200-73101800	Enhancers	Primary B cells from peripheral blood	blood
14	chr15:73101200-73102200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:73101200-73102400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:73101400-73102000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:73101400-73102400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:73101400-73102400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr15:73103600-73103800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:73105600-73105800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:73105800-73117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:73107400-73109200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr15:73107400-73109800	Enhancers	Placenta Amnion	Placenta Amnion

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