Variant report

Variant	nsv984258
Chromosome Location	chr16:12020022-12021662
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GSPT1-1	chr16:12021452-12021736	NONHSAT140608

Extended variants
information (count: 34 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112824802	chr16:12021275-12021276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs60168629	chr16:12021284-12021285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs118142732	chr16:12021288-12021289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs57225110	chr16:12021292-12021293	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs60347225	chr16:12021297-12021298	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs551208131	chr16:12021298-12021299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs141584024	chr16:12021310-12021311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530406082	chr16:12021319-12021320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs79845530	chr16:12021329-12021330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113445369	chr16:12021331-12021332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs256390	chr16:12021332-12021333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs565838037	chr16:12021337-12021338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs375815092	chr16:12021341-12021342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs116375279	chr16:12021346-12021347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs112574008	chr16:12021352-12021353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs552215023	chr16:12021383-12021384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs71136701	chr16:12021387-12021388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs568619596	chr16:12021393-12021394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs537602553	chr16:12021395-12021396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs554339465	chr16:12021398-12021399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200146217	chr16:12021457-12021458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs533821159	chr16:12021458-12021459	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs553810246	chr16:12021465-12021466	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs370684740	chr16:12021477-12021478	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs145980981	chr16:12021486-12021487	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs565342101	chr16:12021497-12021498	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs577661186	chr16:12021499-12021500	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs575813864	chr16:12021502-12021503	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544766302	chr16:12021520-12021521	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs561449324	chr16:12021565-12021566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs201932636	chr16:12021568-12021569	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs530343762	chr16:12021585-12021586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs544179686	chr16:12021586-12021587	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs560635478	chr16:12021609-12021610	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	17603634	CNVD
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Lung cancer	18438408	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21858162	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22102821	CNVD
Autism	22495311	CNVD
idiopathic generalized epilepsy	19843651	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Intellectual disability	22102821	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Myelofibrosis	22110671	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Prostate cancer	18632612	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Lujan-Fryns syndrom	21521776	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	20553308	CNVD
Autism	19786961	CNVD
Mental retardation	19786961	CNVD
Schizophrenia	19786961	CNVD
Mental retardation	19951919	CNVD
Autism	18791038	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Malignant germ cell tumour	17285132	CNVD
Autism	17480035	CNVD
Schizophrenia	19955444	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Melanoma	20877625	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12021200-12021400	Enhancers	K562	blood

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