Variant report

Variant	nsv984311
Chromosome Location	chr16:31804349-31805349
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF720-3	chr16:31804656-31804732	NONHSAT141963
2	lnc-ZNF720-3	chr16:31804656-31804732	NONHSAT141960
3	lnc-ZNF720-3	chr16:31805023-31806190	NONHSAT141960
4	lnc-ZNF720-3	chr16:31805023-31805028	NONHSAT141963

Extended variants
information (count: 33 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139354436	chr16:31804365-31804366	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542933676	chr16:31804381-31804382	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554251609	chr16:31804401-31804402	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528509238	chr16:31804417-31804418	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6565284	chr16:31804434-31804435	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs537277544	chr16:31804453-31804454	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs565281909	chr16:31804501-31804502	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559094276	chr16:31804524-31804525	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs145607045	chr16:31804525-31804526	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569870516	chr16:31804578-31804579	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs530696432	chr16:31804606-31804607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374316433	chr16:31804671-31804672	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs567536721	chr16:31804713-31804714	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs534352242	chr16:31804743-31804744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192359888	chr16:31804771-31804772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs111695941	chr16:31804773-31804774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs541732917	chr16:31804925-31804926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs8056595	chr16:31804933-31804934	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs184642650	chr16:31804994-31804995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs575445413	chr16:31805045-31805046	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs536431712	chr16:31805088-31805089	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs141056204	chr16:31805113-31805114	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs573477600	chr16:31805146-31805147	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs540307055	chr16:31805163-31805164	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs565291002	chr16:31805164-31805165	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs35169918	chr16:31805167-31805168	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs577116293	chr16:31805176-31805177	Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs574896099	chr16:31805212-31805213	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs562936768	chr16:31805216-31805217	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs186780046	chr16:31805258-31805259	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs549178626	chr16:31805274-31805275	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs561076994	chr16:31805287-31805288	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs528379921	chr16:31805323-31805324	ZNF genes & repeats Strong transcription Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Lung cancer	18438408	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Mental retardation	19951919	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	22499536	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22513405	CNVD
Autism	22958593	CNVD
Autism	18184952	CNVD
Autism	19966786	CNVD
Autism	21394203	CNVD
Autism	21969575	CNVD
Autism	22241247	CNVD
Autism	20970697	CNVD
Autism	20942916	CNVD
Epilepsy	20970697	CNVD
Intellectual disability	22045946	CNVD
Mental retardation	19966786	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
Autism	18923514	CNVD
Obesity	21881559	CNVD
Obesity	21956041	CNVD
Autism	20659124	CNVD
Mental retardation	21062444	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22885689	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	20970697	CNVD
Schizophrenia	20433910	CNVD
Schizophrenia	22241247	CNVD
Autism	19242545	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Intracranial ependymoma	16609018	CNVD
Schizophrenia	21399695	CNVD
Autism	21956041	CNVD
Disorders of sex development	21048976	CNVD
Autism	22067053	CNVD
Autism	18156158	CNVD
Mental retardation	20152051	CNVD
Autism	19218893	CNVD
Autism	21289514	CNVD
Schizophrenia	19855392	CNVD
neurodevelopmental Syndrome	20503337	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Neuroblastoma	20406844	CNVD
Autism	19050728	CNVD
Epilepsy	20923578	CNVD
Psychiatric disorder	19050728	CNVD
Schizophrenia	19348701	CNVD
Attention deficit hyperactivity disorder	19097825	CNVD
Autism	20964600	CNVD
Schizophrenia	19955444	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	19571808	CNVD
Breast cancer	20409316	CNVD
Severe combined immunodeficiency	19097825	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Autism	18522746	CNVD
Sezary syndrome	18413736	CNVD
Wilms tumour	21544195	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31796200-31805200	Weak transcription	HSMMtube	muscle
2	chr16:31801800-31813000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr16:31803800-31804600	Strong transcription	Psoas Muscle	Psoas
4	chr16:31804400-31805200	Weak transcription	Right Ventricle	heart
5	chr16:31804600-31805000	Weak transcription	Psoas Muscle	Psoas
6	chr16:31805000-31805600	Strong transcription	Psoas Muscle	Psoas
7	chr16:31805200-31805600	ZNF genes & repeats	HSMMtube	muscle
8	chr16:31805200-31805800	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr16:31805200-31805800	Strong transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links