Variant report
Variant | nsv984470 |
---|---|
Chromosome Location | chr11:51330901-51393222 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs151082153 | chr11:51335004-51335005 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs571238313 | chr11:51335022-51335023 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs200066044 | chr11:51335028-51335029 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs77830340 | chr11:51335032-51335033 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs1603763 | chr11:51335033-51335034 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs7294025 | chr11:51335035-51335036 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs141005450 | chr11:51335052-51335053 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs576226214 | chr11:51335074-51335075 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs543713638 | chr11:51335079-51335080 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs558611370 | chr11:51335083-51335084 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs577285914 | chr11:51335086-51335087 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs368485380 | chr11:51335087-51335088 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs59448081 | chr11:51335112-51335113 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs559875227 | chr11:51335140-51335141 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs11603701 | chr11:51335144-51335145 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
16 | rs12575799 | chr11:51335154-51335155 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs190402255 | chr11:51335158-51335159 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs182666159 | chr11:51335161-51335162 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs374948522 | chr11:51335168-51335169 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs368144423 | chr11:51335173-51335174 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs571087366 | chr11:51335177-51335178 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs146516994 | chr11:51335182-51335183 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs551452287 | chr11:51335218-51335219 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs569685810 | chr11:51335223-51335224 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs565398987 | chr11:51335235-51335236 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs560446232 | chr11:51335244-51335245 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs535948792 | chr11:51335248-51335249 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs554430824 | chr11:51335258-51335259 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs569814449 | chr11:51335272-51335273 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs577352359 | chr11:51335301-51335302 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs536875471 | chr11:51335303-51335304 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs558809529 | chr11:51335305-51335306 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs577249213 | chr11:51335311-51335312 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs541395605 | chr11:51335313-51335314 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs546128036 | chr11:51335320-51335321 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs563187876 | chr11:51335321-51335322 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs574957340 | chr11:51335328-51335329 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
38 | rs139078154 | chr11:51335343-51335344 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
39 | rs563665807 | chr11:51335348-51335349 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs531113274 | chr11:51335355-51335356 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs546130090 | chr11:51335357-51335358 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs528772515 | chr11:51335366-51335367 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs146860118 | chr11:51335372-51335373 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs577330502 | chr11:51335380-51335381 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs142994127 | chr11:51335381-51335382 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs369044918 | chr11:51335383-51335384 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs147023545 | chr11:51335385-51335386 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs186991540 | chr11:51335395-51335396 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs74533694 | chr11:51335402-51335403 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs138091520 | chr11:51335413-51335414 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chordoma | 21602918 | CNVD |
Breast cancer | 21949216 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Beckwith-Wiedemann syndrome | 21518781 | CNVD |
Wilms tumour | 21518781 | CNVD |
Hepatoblastoma | 21518781 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Wilms tumour | 21544195 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Autism | 22495311 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Intellectual disability | 22102821 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Potocki-Shaffer syndrome | 19222835 | CNVD |
WAGR syndrome | 19222835 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16608533 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Colorectal cancer | 21128281 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21990379 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Intellectual disability | 22045946 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Mortal | 21835882 | CNVD |
Breast cancer | 21785460 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:51335000-51338400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr11:51337400-51337800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
3 | chr11:51338800-51343200 | ZNF genes & repeats | Liver | Liver |
4 | chr11:51341000-51343800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
5 | chr11:51355800-51359800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
6 | chr11:51361600-51362400 | ZNF genes & repeats | Liver | Liver |
7 | chr11:51364000-51368800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
8 | chr11:51364400-51367000 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
9 | chr11:51366600-51367600 | ZNF genes & repeats | Adipose Nuclei | Adipose |
10 | chr11:51366600-51368400 | ZNF genes & repeats | Liver | Liver |
11 | chr11:51369600-51370800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
12 | chr11:51371200-51372000 | ZNF genes & repeats | Liver | Liver |