Variant report

Variant	nsv9852
Chromosome Location	chr21:15288831-15290942
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:137 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116622380	chr21:15288836-15288837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs375526867	chr21:15288854-15288855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs373550750	chr21:15288855-15288856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201997637	chr21:15288856-15288857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200449616	chr21:15288871-15288872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs367845645	chr21:15288872-15288873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs55755065	chr21:15288873-15288874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74313272	chr21:15288884-15288885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs3094801	chr21:15288903-15288904	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs193276329	chr21:15288906-15288907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575647492	chr21:15288927-15288928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2107365	chr21:15288950-15288951	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs553337352	chr21:15288954-15288955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572248468	chr21:15288959-15288960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs2822253	chr21:15288967-15288968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541377565	chr21:15289013-15289014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs438579	chr21:15289026-15289027	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs529943913	chr21:15289040-15289041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs543662230	chr21:15289044-15289045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs3094802	chr21:15289048-15289049	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs3115460	chr21:15289067-15289068	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs551840448	chr21:15289071-15289072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149715326	chr21:15289096-15289097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147488235	chr21:15289099-15289100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183616889	chr21:15289115-15289116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576252491	chr21:15289130-15289131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548986901	chr21:15289161-15289162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188331028	chr21:15289176-15289177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370480073	chr21:15289201-15289202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537216668	chr21:15289214-15289215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139949615	chr21:15289226-15289227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181253989	chr21:15289230-15289231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs539972517	chr21:15289248-15289249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs3115461	chr21:15289252-15289253	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs3094804	chr21:15289273-15289274	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs184328170	chr21:15289282-15289283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs145353032	chr21:15289331-15289332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs4432555	chr21:15289358-15289359	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs79601972	chr21:15289367-15289368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs398101485	chr21:15289369-15289370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543601380	chr21:15289419-15289420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs3094805	chr21:15289443-15289444	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs7509642	chr21:15289449-15289450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs7510220	chr21:15289450-15289451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201572083	chr21:15289454-15289455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs374467627	chr21:15289480-15289481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576859303	chr21:15289484-15289485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs190145566	chr21:15289485-15289486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs2822254	chr21:15289513-15289514	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs370606879	chr21:15289563-15289564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15277000-15292200	Weak transcription	Dnd41	blood

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