Variant report

Variant	nsv9947
Chromosome Location	chrX:57635783-57703304
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:57682992..57684642-chrX:57687037..57689864,2	MCF-7	breast:
2	chrX:57676792..57678804-chrX:57680775..57682824,2	MCF-7	breast:
3	chrX:57676792..57678804-chrX:57680775..57682824,2	MCF-7	breast:
4	chrX:57616778..57619182-chrX:57669301..57671313,2	MCF-7	breast:
5	chrX:57617996..57620588-chrX:57675872..57678039,2	MCF-7	breast:
6	chrX:57682992..57684642-chrX:57687037..57689864,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZXDB-1	chrX:57680523-57680873	XLOC_007998
2	lnc-ZXDB-1	chrX:57667298-57667326	XLOC_007998

No data

Variant related genes	Relation type
ENSG00000198455	chromatin interactions

Extended variants
information (count: 357 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:357 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193056142	chrX:57641415-57641416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs183019800	chrX:57641430-57641431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs188104334	chrX:57641474-57641475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs192494613	chrX:57641623-57641624	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs149432199	chrX:57641628-57641629	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs184471425	chrX:57641786-57641787	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs189445778	chrX:57641878-57641879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs7883396	chrX:57641904-57641905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs192441363	chrX:57641912-57641913	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs373660398	chrX:57641916-57641917	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs148164692	chrX:57641926-57641927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs142993292	chrX:57641956-57641957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs113856463	chrX:57641959-57641960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs184565005	chrX:57641982-57641983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs189011811	chrX:57642024-57642025	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs146115166	chrX:57642244-57642245	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs35035672	chrX:57642306-57642307	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs377689925	chrX:57642320-57642321	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs55742868	chrX:57642393-57642394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs139781421	chrX:57646800-57646801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs181846650	chrX:57646832-57646833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs145276159	chrX:57646985-57646986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs1073007	chrX:57647002-57647003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs368134137	chrX:57647060-57647061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs568489070	chrX:57647114-57647115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs186914691	chrX:57647219-57647220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs191453859	chrX:57647340-57647341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs371871715	chrX:57647354-57647355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs182595818	chrX:57647385-57647386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147194222	chrX:57647427-57647428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs140556559	chrX:57647436-57647437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs186827949	chrX:57647447-57647448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189743431	chrX:57647491-57647492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs182164994	chrX:57647558-57647559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs188957330	chrX:57647573-57647574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs73513211	chrX:57665029-57665030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs5961017	chrX:57665107-57665108	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs5961018	chrX:57665173-57665174	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs143858947	chrX:57665191-57665192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs188302363	chrX:57665237-57665238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs180704809	chrX:57665240-57665241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs9698470	chrX:57665324-57665325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs144885935	chrX:57665336-57665337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs147511497	chrX:57665338-57665339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs186566098	chrX:57665411-57665412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs9699256	chrX:57665444-57665445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs562403841	chrX:57665516-57665517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs191025178	chrX:57665557-57665558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs181858567	chrX:57665579-57665580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs187027972	chrX:57665673-57665674	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Cancer	21637783	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Cancer	16751803	CNVD
Intellectual disability	23615299	CNVD
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	22286061	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Cancer	20164919	CNVD
Thyroid cancer	19087340	CNVD
lymphocytic leukemia	21291569	CNVD
Cervical cancer	21062161	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	19835627	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Congenital diaphragmatic hernia	21525063	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57641400-57642200	ZNF genes & repeats	Liver	Liver
2	chrX:57642000-57642400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chrX:57646800-57647600	Enhancers	Dnd41	blood
4	chrX:57665000-57668400	Enhancers	HepG2	liver
5	chrX:57666400-57667800	Enhancers	Liver	Liver
6	chrX:57667800-57671400	Weak transcription	Liver	Liver
7	chrX:57668400-57669800	Weak transcription	HepG2	liver
8	chrX:57669800-57671800	Enhancers	HepG2	liver
9	chrX:57671400-57671800	Enhancers	Liver	Liver
10	chrX:57672800-57674400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chrX:57673000-57673600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chrX:57673000-57674000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chrX:57673000-57674600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chrX:57673200-57673800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chrX:57673200-57674400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chrX:57673600-57674000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chrX:57673600-57674000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chrX:57673800-57674200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chrX:57673800-57674400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chrX:57674000-57674400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chrX:57674000-57675400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chrX:57674000-57677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chrX:57674200-57674600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chrX:57674400-57674600	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chrX:57674400-57677400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chrX:57674400-57677600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chrX:57674600-57677000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chrX:57677000-57677800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chrX:57677200-57677800	Enhancers	H1 Cell Line	embryonic stem cell
30	chrX:57677200-57677800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chrX:57677400-57677800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chrX:57677400-57678000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chrX:57677400-57678400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chrX:57677400-57678400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chrX:57677600-57678400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chrX:57677600-57678400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chrX:57677600-57678400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chrX:57677600-57679000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chrX:57677800-57678200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chrX:57677800-57678200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
41	chrX:57678200-57678400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chrX:57678200-57678800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chrX:57680600-57682800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chrX:57681600-57682600	ZNF genes & repeats	Aorta	Aorta
45	chrX:57681800-57682000	Active TSS	Brain Angular Gyrus	brain
46	chrX:57682000-57683200	Weak transcription	Brain Angular Gyrus	brain
47	chrX:57683200-57683400	Enhancers	Brain Angular Gyrus	brain
48	chrX:57701200-57703400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links