Variant report

Variant	nsv997532
Chromosome Location	chr3:102777201-102811504
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 739 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:739 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555672258	chr3:102777261-102777262	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs142695443	chr3:102777263-102777264	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs146918149	chr3:102777270-102777271	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs137915525	chr3:102777350-102777351	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs562426688	chr3:102777365-102777366	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs542919337	chr3:102777386-102777387	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs560521407	chr3:102777414-102777415	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187983282	chr3:102777497-102777498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs543086030	chr3:102777536-102777537	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141663003	chr3:102777552-102777553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs372697919	chr3:102777590-102777591	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs150541214	chr3:102777595-102777596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs547528800	chr3:102777601-102777602	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs559590475	chr3:102777615-102777616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs544547753	chr3:102777619-102777620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs58976960	chr3:102777628-102777629	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs346894	chr3:102777640-102777641	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs548516798	chr3:102777690-102777691	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs569998811	chr3:102777744-102777745	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs149309177	chr3:102777759-102777760	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs191674106	chr3:102777795-102777796	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs146272530	chr3:102777802-102777803	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs549950655	chr3:102777890-102777891	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs571707873	chr3:102777896-102777897	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs538768421	chr3:102777912-102777913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs59536191	chr3:102777944-102777945	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs578080508	chr3:102777971-102777972	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs576591512	chr3:102777990-102777991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs545558345	chr3:102778007-102778008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs183863396	chr3:102778088-102778089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs139362205	chr3:102778089-102778090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs371793831	chr3:102778106-102778107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs346895	chr3:102778108-102778109	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs144155690	chr3:102778121-102778122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs188429234	chr3:102778136-102778137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs531463469	chr3:102778141-102778142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs180792061	chr3:102778167-102778168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs576825748	chr3:102778196-102778197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs572098016	chr3:102778200-102778201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs185747181	chr3:102778219-102778220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs146050230	chr3:102778223-102778224	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs369067604	chr3:102778238-102778239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs529898182	chr3:102778280-102778281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550932972	chr3:102778316-102778317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs114814787	chr3:102778321-102778322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs530756302	chr3:102778363-102778364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs550111410	chr3:102778408-102778409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs540985491	chr3:102778409-102778410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs36082993	chr3:102778423-102778424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs115680821	chr3:102778503-102778504	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Renal cell carcinoma	18765545	CNVD

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102776200-102779600	Enhancers	Fetal Intestine Small	intestine
2	chr3:102777200-102778000	Weak transcription	Fetal Intestine Large	intestine
3	chr3:102778000-102778600	Enhancers	Fetal Intestine Large	intestine
4	chr3:102778600-102779000	Weak transcription	Fetal Intestine Large	intestine
5	chr3:102779000-102779800	Enhancers	Fetal Intestine Large	intestine
6	chr3:102779600-102780000	Weak transcription	Fetal Intestine Small	intestine
7	chr3:102780000-102780200	Enhancers	Fetal Intestine Small	intestine
8	chr3:102780200-102784000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:102784000-102784400	Enhancers	Fetal Intestine Small	intestine
10	chr3:102794400-102794600	Enhancers	Fetal Kidney	kidney
11	chr3:102795800-102797400	Enhancers	Fetal Intestine Large	intestine
12	chr3:102796000-102797400	Enhancers	Fetal Intestine Small	intestine
13	chr3:102796600-102796800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:102796600-102799000	Weak transcription	Fetal Kidney	kidney
15	chr3:102796800-102800800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:102797400-102797800	Weak transcription	Fetal Intestine Large	intestine
17	chr3:102797400-102799000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:102797800-102798000	Enhancers	Fetal Intestine Large	intestine
19	chr3:102798000-102799000	Weak transcription	Fetal Intestine Large	intestine
20	chr3:102799000-102799400	Enhancers	Fetal Intestine Large	intestine
21	chr3:102799000-102799400	Enhancers	Fetal Intestine Small	intestine
22	chr3:102799000-102799600	Active TSS	Fetal Lung	lung
23	chr3:102799400-102802800	Weak transcription	Fetal Intestine Large	intestine
24	chr3:102799400-102802800	Weak transcription	Fetal Intestine Small	intestine
25	chr3:102800800-102801000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:102801000-102802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:102802000-102802200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:102802800-102805400	Enhancers	Fetal Intestine Large	intestine
29	chr3:102802800-102805400	Enhancers	Fetal Intestine Small	intestine
30	chr3:102803400-102805600	Enhancers	Fetal Kidney	kidney
31	chr3:102804000-102805200	Enhancers	Duodenum Mucosa	Duodenum
32	chr3:102805400-102806400	Weak transcription	Fetal Intestine Large	intestine
33	chr3:102805400-102806400	Weak transcription	Fetal Intestine Small	intestine
34	chr3:102805800-102806200	Enhancers	Hela-S3	cervix
35	chr3:102806400-102807200	Enhancers	Fetal Intestine Large	intestine
36	chr3:102806600-102806800	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links