Variant report

Variant	nsv997622
Chromosome Location	chr4:3576957-3750477
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1592)
CpG islands
(count:7628)
Chromatin interactive
region (count:130)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1592 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:3673560-3674036	HepG2	liver:	n/a	n/a
2	ATF1	chr4:3622207-3622400	K562	blood:	n/a	n/a
3	ATF2	chr4:3677029-3677356	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr4:3677008-3677424	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF3	chr4:3747943-3748348	A549	lung:	n/a	n/a
6	ATF3	chr4:3647120-3647372	K562	blood:	n/a	n/a
7	ATF3	chr4:3747953-3748718	A549	lung:	n/a	n/a
8	ATF3	chr4:3748424-3748780	A549	lung:	n/a	n/a
9	BACH1	chr4:3642457-3642549	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr4:3677224-3677270	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr4:3705425-3705710	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr4:3600326-3600440	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr4:3591953-3592306	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr4:3591938-3592292	K562	blood:	n/a	n/a
15	BCL11A	chr4:3748179-3748596	GM12878	blood:	n/a	n/a
16	BCL3	chr4:3748451-3748951	GM12878	blood:	n/a	n/a
17	BCL3	chr4:3715787-3716400	GM12878	blood:	n/a	chr4:3715840-3715849
18	BCL3	chr4:3714152-3714450	GM12878	blood:	n/a	n/a
19	BCL3	chr4:3623754-3623964	GM12878	blood:	n/a	n/a
20	BCL3	chr4:3654399-3654631	GM12878	blood:	n/a	n/a
21	BCL3	chr4:3590653-3590888	GM12878	blood:	n/a	n/a
22	BCL3	chr4:3714099-3714481	GM12878	blood:	n/a	n/a
23	BCL3	chr4:3748715-3749072	GM12878	blood:	n/a	n/a
24	BCL3	chr4:3715793-3716328	GM12878	blood:	n/a	chr4:3715840-3715849
25	BCL3	chr4:3687530-3687808	GM12878	blood:	n/a	n/a
26	BHLHE40	chr4:3608584-3609011	K562	blood:	n/a	n/a
27	BHLHE40	chr4:3600235-3600737	K562	blood:	n/a	n/a
28	BHLHE40	chr4:3587360-3587604	K562	blood:	n/a	n/a
29	BHLHE40	chr4:3748478-3748650	K562	blood:	n/a	n/a
30	BHLHE40	chr4:3748411-3748750	A549	lung:	n/a	n/a
31	BHLHE40	chr4:3586629-3586990	HepG2	liver:	n/a	n/a
32	BHLHE40	chr4:3677196-3677396	K562	blood:	n/a	n/a
33	BHLHE40	chr4:3642423-3642629	K562	blood:	n/a	n/a
34	BHLHE40	chr4:3592078-3592121	K562	blood:	n/a	n/a
35	BHLHE40	chr4:3656859-3656898	K562	blood:	n/a	n/a
36	BRCA1	chr4:3608320-3608528	HepG2	liver:	n/a	n/a
37	BRCA1	chr4:3578147-3578290	HepG2	liver:	n/a	n/a
38	BRCA1	chr4:3627837-3627845	GM12878	blood:	n/a	n/a
39	BRCA1	chr4:3625592-3625788	H1-hESC	embryonic stem cell:	n/a	n/a
40	BRCA1	chr4:3632378-3632408	HepG2	liver:	n/a	n/a
41	BRCA1	chr4:3608319-3608550	H1-hESC	embryonic stem cell:	n/a	n/a
42	BRCA1	chr4:3605428-3605440	GM12878	blood:	n/a	n/a
43	CBX3	chr4:3748454-3749141	HCT-116	colon:	n/a	n/a
44	CBX3	chr4:3744327-3744768	K562	blood:	n/a	n/a
45	CBX3	chr4:3744396-3744753	K562	blood:	n/a	n/a
46	CEBPB	chr4:3608752-3609056	A549	lung:	n/a	chr4:3608890-3608901
47	CEBPB	chr4:3726397-3726886	A549	lung:	n/a	chr4:3726602-3726613
48	CEBPB	chr4:3726407-3726677	A549	lung:	n/a	chr4:3726602-3726613
49	CEBPB	chr4:3726548-3726682	HepG2	liver:	n/a	chr4:3726602-3726613
50	CEBPB	chr4:3698714-3699007	K562	blood:	n/a	chr4:3698828-3698839

(count:7628 , 50 per page) page: 1 2 3 4 5 6 7 ... 153

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:3671697-3671747	HPAEpiC	pulmonary alveolar:	n/a
2	chr4:3640481-3640531	K562	blood:	n/a
3	chr4:3685438-3685488	CMK	blood:	n/a
4	chr4:3671697-3671747	HPAEpiC	pulmonary alveolar:	n/a
5	chr4:3640481-3640531	K562	blood:	n/a
6	chr4:3685438-3685488	CMK	blood:	n/a
7	chr4:3643635-3643685	SK-N-MC	brain:	n/a
8	chr4:3691033-3691083	Jurkat	blood:	n/a
9	chr4:3746513-3746563	GM12878	blood:	n/a
10	chr4:3664401-3664451	PrEC	prostate:	n/a
11	chr4:3651233-3651283	GM06990	blood:	n/a
12	chr4:3617888-3617938	BJ	skin:	n/a
13	chr4:3597580-3597630	ovcar-3	ovarian:	n/a
14	chr4:3597859-3597909	SK-N-SH	brain:	n/a
15	chr4:3747424-3747474	PANC-1	pancreas:	n/a
16	chr4:3685357-3685407	HEEpiC	esophagus:	n/a
17	chr4:3591216-3591266	GM19239	blood:	n/a
18	chr4:3683268-3683318	AG10803	skin:	n/a
19	chr4:3642351-3642401	ECC-1	luminal epithelium:	n/a
20	chr4:3691238-3691288	GM06990	blood:	n/a
21	chr4:3746931-3746981	HPAEpiC	pulmonary alveolar:	n/a
22	chr4:3617603-3617653	PFSK-1	brain:	n/a
23	chr4:3692142-3692192	HUVEC	blood vessel:	n/a
24	chr4:3642351-3642401	ovcar-3	ovarian:	n/a
25	chr4:3713224-3713274	AG09319	gingival:	n/a
26	chr4:3684756-3684806	Hela-S3	cervix:	n/a
27	chr4:3746025-3746075	LNCaP	prostate:	n/a
28	chr4:3677497-3677547	GM06990	blood:	n/a
29	chr4:3677497-3677547	HEK293	kidney:	embryo
30	chr4:3748554-3748604	GM06990	blood:	n/a
31	chr4:3746221-3746271	HCPEpiC	choroid plexus:	n/a
32	chr4:3681759-3681809	MCF10A-Er-Src	breast:	n/a
33	chr4:3682627-3682677	HepG2	liver:	n/a
34	chr4:3739599-3739649	PFSK-1	brain:	n/a
35	chr4:3685438-3685488	IMR90	lung:	fetal
36	chr4:3684756-3684806	K562	blood:	n/a
37	chr4:3640481-3640531	RPTEC	kidney:	n/a
38	chr4:3736042-3736092	GM12878	blood:	n/a
39	chr4:3746874-3746924	CMK	blood:	n/a
40	chr4:3691397-3691447	NB4	blood:	n/a
41	chr4:3747677-3747727	AG09319	gingival:	n/a
42	chr4:3746443-3746493	HRE	kidney:	n/a
43	chr4:3577496-3577546	BE2_C	brain:	n/a
44	chr4:3643635-3643685	GM12878	blood:	n/a
45	chr4:3691297-3691347	HRCEpiC	kidney:	n/a
46	chr4:3651354-3651404	U87	brain:	n/a
47	chr4:3749615-3749665	RPTEC	kidney:	n/a
48	chr4:3691908-3691958	PFSK-1	brain:	n/a
49	chr4:3692712-3692762	HL-60	blood:	n/a
50	chr4:3730756-3730806	NH-A	brain:	n/a

(count:130 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr4:3692469..3695326-chr4:3700612..3702603,2	MCF-7	breast:
2	chr4:3696636..3698190-chr4:3703877..3705848,2	K562	blood:
3	chr4:3687166..3689653-chr4:3692993..3695673,2	MCF-7	breast:
4	chr4:3668100..3670779-chr4:3672162..3674939,3	MCF-7	breast:
5	chr4:3576753..3579179-chr4:3579407..3585070,6	K562	blood:
6	chr4:3662225..3664999-chr4:3667626..3669601,2	MCF-7	breast:
7	chr4:3720745..3724824-chr4:3727644..3730429,3	K562	blood:
8	chr4:3696636..3698190-chr4:3703877..3705848,2	K562	blood:
9	chr4:3733497..3735289-chr4:3740604..3743171,2	MCF-7	breast:
10	chr4:3597398..3599572-chr4:3602811..3604906,3	K562	blood:
11	chr4:3672629..3675074-chr4:3688483..3690772,2	MCF-7	breast:
12	chr4:3687613..3689939-chr4:3692634..3695319,3	K562	blood:
13	chr4:3734183..3737112-chr4:3747627..3749869,2	MCF-7	breast:
14	chr4:3531986..3534650-chr4:3657102..3659521,2	MCF-7	breast:
15	chr4:3640864..3643694-chr4:3644152..3647066,2	MCF-7	breast:
16	chr4:3666324..3668294-chr4:3766330..3768153,2	MCF-7	breast:
17	chr4:3734183..3737112-chr4:3747627..3749869,2	MCF-7	breast:
18	chr4:3731474..3733507-chr4:3734661..3736771,2	K562	blood:
19	chr4:3640864..3643694-chr4:3644152..3647066,2	MCF-7	breast:
20	chr4:3732579..3734832-chr4:3738622..3741256,2	K562	blood:
21	chr4:3719651..3722174-chr4:3722524..3724517,2	K562	blood:
22	chr4:3687613..3689939-chr4:3692634..3695319,3	K562	blood:
23	chr4:3631211..3633906-chr4:3645708..3648279,2	K562	blood:
24	chr4:3671273..3672822-chr4:3674829..3676545,2	K562	blood:
25	chr4:3638839..3640408-chr4:3642278..3643885,2	K562	blood:
26	chr4:3665678..3668678-chr4:3669594..3672149,4	MCF-7	breast:
27	chr4:3749442..3749991-chr4:3785209..3785794,2	MCF-7	breast:
28	chr4:3614332..3616102-chr4:3632475..3634431,2	MCF-7	breast:
29	chr4:3743213..3745544-chr4:3747612..3750605,2	K562	blood:
30	chr4:3679034..3681438-chr4:3689559..3691418,2	K562	blood:
31	chr4:3747628..3750191-chr4:3756565..3759403,2	K562	blood:
32	chr4:3688266..3689130-chr4:3828986..3829489,2	MCF-7	breast:
33	chr4:3681658..3684055-chr4:3685027..3686555,2	MCF-7	breast:
34	chr4:3692469..3695326-chr4:3700612..3702603,2	MCF-7	breast:
35	chr4:3715270..3718190-chr4:3721526..3723393,2	K562	blood:
36	chr4:3589181..3591433-chr4:3604474..3606067,2	MCF-7	breast:
37	chr4:3731474..3733507-chr4:3734661..3736771,2	K562	blood:
38	chr4:3603523..3606403-chr4:3623528..3625485,2	K562	blood:
39	chr4:3631211..3633906-chr4:3645708..3648279,2	K562	blood:
40	chr4:3577022..3579696-chr4:3767335..3769205,3	MCF-7	breast:
41	chr4:3728407..3730608-chr4:3954837..3956442,2	K562	blood:
42	chr4:3597553..3600117-chr4:3602844..3606284,4	K562	blood:
43	chr4:3602447..3604350-chr4:3607841..3610609,2	K562	blood:
44	chr4:3621204..3623586-chr4:3624430..3626099,2	MCF-7	breast:
45	chr4:3662225..3664999-chr4:3667626..3669601,2	MCF-7	breast:
46	chr4:3654292..3658387-chr4:3660533..3665112,5	MCF-7	breast:
47	chr4:3630276..3631981-chr4:3635694..3637377,2	MCF-7	breast:
48	chr4:3589181..3591433-chr4:3604474..3606067,2	MCF-7	breast:
49	chr4:3685214..3686952-chr4:3688635..3690383,2	K562	blood:
50	chr4:3658292..3659804-chr4:3662299..3664956,2	K562	blood:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP3-368B9.1.1-1	chr4:3590661-3590741	XLOC_003428
2	lnc-RP3-368B9.1.1-1	chr4:3589778-3589914	XLOC_003428
3	lnc-LRPAP1-2	chr4:3675321-3675588	XLOC_003861
4	lnc-LRPAP1-2	chr4:3678330-3678408	XLOC_003861
5	lnc-LRPAP1-2	chr4:3678898-3679582	XLOC_003861
6	lnc-LRPAP1-2	chr4:3678898-3679582	ENSG00000250632
7	lnc-RP3-368B9.1.1-1	chr4:3589602-3589777	NR_040045
8	lnc-LRPAP1-6	chr4:3648696-3649380	ucscGeneNc_uc003ghl_2
9	lnc-RP3-368B9.1.1-1	chr4:3590661-3592712	NR_040045
10	lnc-LRPAP1-5	chr4:3600844-3601755	NONHSAT094890
11	lnc-LRPAP1-6	chr4:3648128-3648206	ucscGeneNc_uc003ghl_2
12	lnc-LRPAP1-2	chr4:3678330-3678408	ENSG00000250632
13	lnc-RP3-368B9.1.1-3	chr4:3634756-3634973	XLOC_003429
14	lnc-LRPAP1-2	chr4:3675320-3675588	ENSG00000250632
15	lnc-RP3-368B9.1.1-3	chr4:3635455-3635702	XLOC_003429
16	lnc-RP3-368B9.1.1-1	chr4:3578596-3578850	NR_040045
17	lnc-RP3-368B9.1.1-1	chr4:3591991-3592438	XLOC_003428
18	lnc-RP3-368B9.1.1-1	chr4:3589602-3589777	XLOC_003428
19	lnc-RP3-368B9.1.1-5	chr4:3650108-3650607	XLOC_003431
20	lnc-RP3-368B9.1.1-5	chr4:3650783-3650922	XLOC_003431
21	lnc-RP3-368B9.1.1-1	chr4:3578596-3578850	XLOC_003428
22	lnc-LRPAP1-5	chr4:3600324-3600789	NONHSAT094890
23	lnc-RP3-368B9.1.1-1	chr4:3578596-3578850	XLOC_003428
24	lnc-RP3-368B9.1.1-1	chr4:3590661-3592166	XLOC_003428
25	lnc-LRPAP1-6	chr4:3645119-3645386	ucscGeneNc_uc003ghl_2

No data

Variant related genes	Relation type
ENSG00000250681	TF binding region
ENSG00000250632	TF binding region
LINC00955	TF binding region
ENSG00000250681	CpG island
ENSG00000250632	CpG island
LINC00955	CpG island
ENSG00000251669	chromatin interactions
ENSG00000216560	chromatin interactions
ENSG00000163956	chromatin interactions
ENSG00000184160	chromatin interactions
ENSG00000250681	chromatin interactions
ENSG00000175920	chromatin interactions
ENSG00000173588	chromatin interactions
ENSG00000250632	chromatin interactions
ENSG00000250986	chromatin interactions
TMEM2	miRNA target sites

Extended variants
information (count: 10517 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:10517 , 50 per page) page: 1 2 3 4 5 6 7 ... 211

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533460674	chr4:3576985-3576986	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs552440625	chr4:3577001-3577002	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs562502386	chr4:3577002-3577003	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs77034390	chr4:3577006-3577007	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs62275427	chr4:3577024-3577025	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs531634831	chr4:3577028-3577029	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs548155558	chr4:3577037-3577038	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs62275428	chr4:3577040-3577041	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs57208408	chr4:3577048-3577049	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs533573723	chr4:3577087-3577088	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs73084778	chr4:3577114-3577115	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs546988570	chr4:3577147-3577148	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs62275429	chr4:3577148-3577149	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs570255342	chr4:3577172-3577173	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs116486081	chr4:3577178-3577179	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs1188602	chr4:3577180-3577181	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs187644976	chr4:3577213-3577214	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs143971235	chr4:3577219-3577220	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs536162961	chr4:3577233-3577234	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs148661983	chr4:3577250-3577251	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs555821072	chr4:3577262-3577263	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs572754323	chr4:3577293-3577294	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs142192902	chr4:3577311-3577312	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs192184317	chr4:3577318-3577319	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs66885849	chr4:3577323-3577324	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs578150662	chr4:3577324-3577325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs73199335	chr4:3577337-3577338	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs75608596	chr4:3577350-3577351	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs78835088	chr4:3577352-3577353	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs78354001	chr4:3577354-3577355	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs79181597	chr4:3577360-3577361	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs73792237	chr4:3577379-3577380	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs73199336	chr4:3577385-3577386	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs151210274	chr4:3577402-3577403	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs67224542	chr4:3577409-3577410	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs73084784	chr4:3577427-3577428	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs67381523	chr4:3577452-3577453	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs562722807	chr4:3577455-3577456	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs67172004	chr4:3577460-3577461	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs112291511	chr4:3577476-3577477	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs67253439	chr4:3577518-3577519	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs541988642	chr4:3577535-3577536	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs73086946	chr4:3577541-3577542	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs73086948	chr4:3577582-3577583	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs561884103	chr4:3577635-3577636	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs112625605	chr4:3577645-3577646	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs527574138	chr4:3577646-3577647	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs66813665	chr4:3577650-3577651	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs73199338	chr4:3577665-3577666	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs76386116	chr4:3577674-3577675	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Retinitis pigmentosa	18421352	CNVD
Wolf-Hirschhorn syndrome	19259404	CNVD
Bladder cancer	19242612	CNVD
Breast cancer	19242612	CNVD
Congenital anomalies of the kidney and urinary tract	19242612	CNVD
abnormal development	18461090	CNVD
Olfactory neuroblastoma	18408657	CNVD
Wilms tumour	21544195	CNVD
Melanoma	20688739	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1462 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3550600-3580400	Weak transcription	Right Atrium	heart
2	chr4:3573000-3580200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:3573800-3578200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:3576000-3579600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:3576600-3577600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:3576600-3580200	Weak transcription	Gastric	stomach
7	chr4:3576800-3578600	Enhancers	Fetal Intestine Large	intestine
8	chr4:3577000-3577200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:3577000-3577200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:3577000-3578600	Enhancers	Fetal Intestine Small	intestine
11	chr4:3577200-3577400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:3577200-3577400	Bivalent Enhancer	HepG2	liver
13	chr4:3577400-3577600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:3577400-3577800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr4:3577400-3578000	Flanking Bivalent TSS/Enh	HepG2	liver
16	chr4:3577600-3577800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:3577600-3577800	Bivalent Enhancer	Right Ventricle	heart
18	chr4:3577600-3578800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:3577800-3578200	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:3578000-3578400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr4:3578000-3578600	Flanking Active TSS	HepG2	liver
22	chr4:3578200-3578400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:3578200-3578400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:3578400-3578800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr4:3578400-3579000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
26	chr4:3578600-3578800	Active TSS	Fetal Intestine Large	intestine
27	chr4:3578600-3578800	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr4:3578600-3579200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
29	chr4:3578600-3579400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:3578600-3579400	Enhancers	HepG2	liver
31	chr4:3578600-3579600	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr4:3578800-3579000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:3578800-3579000	Flanking Active TSS	Fetal Intestine Large	intestine
34	chr4:3578800-3579400	Active TSS	Duodenum Mucosa	Duodenum
35	chr4:3578800-3579400	Bivalent Enhancer	Right Ventricle	heart
36	chr4:3579000-3579200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr4:3579000-3579600	Active TSS	Fetal Intestine Large	intestine
38	chr4:3579400-3580000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:3579400-3582200	Weak transcription	HepG2	liver
40	chr4:3579600-3580400	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr4:3579600-3580600	Enhancers	Fetal Intestine Small	intestine
42	chr4:3579600-3580800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:3580000-3580600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr4:3580200-3580600	ZNF genes & repeats	Gastric	stomach
45	chr4:3580400-3582600	Weak transcription	Fetal Intestine Large	intestine
46	chr4:3580600-3582400	Weak transcription	Fetal Intestine Small	intestine
47	chr4:3580800-3581000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr4:3580800-3581000	Bivalent Enhancer	HSMMtube	muscle
49	chr4:3581000-3582600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr4:3582200-3582800	Enhancers	HepG2	liver

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