Variant report
Variant | nsv997932 |
---|---|
Chromosome Location | chr1:102669955-102796625 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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(count:2 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-OLFM3-1 | chr1:102775825-102775884 | XLOC_000943 |
2 | lnc-OLFM3-1 | chr1:102775826-102775884 | XLOC_000943 |
No data |
No data |
Variant related genes | Relation type |
---|---|
C1orf103 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs146156672 | chr1:102676600-102676601 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs560528965 | chr1:102676601-102676602 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs572543026 | chr1:102676652-102676653 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs4356072 | chr1:102676716-102676717 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
5 | rs564882536 | chr1:102676738-102676739 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs532310500 | chr1:102676746-102676747 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs544355903 | chr1:102676757-102676758 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs2154363 | chr1:102676762-102676763 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs187160202 | chr1:102676779-102676780 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs139940622 | chr1:102676804-102676805 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs531824283 | chr1:102676843-102676844 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs374355204 | chr1:102676848-102676849 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs566862786 | chr1:102676874-102676875 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs113684183 | chr1:102676943-102676944 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs189859091 | chr1:102676956-102676957 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs182135539 | chr1:102676961-102676962 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs12742089 | chr1:102677000-102677001 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs538168996 | chr1:102677005-102677006 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs149851780 | chr1:102677009-102677010 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs184975641 | chr1:102677030-102677031 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs373609118 | chr1:102677052-102677053 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs144701051 | chr1:102677065-102677066 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs557055779 | chr1:102677070-102677071 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs148504159 | chr1:102677116-102677117 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs190134477 | chr1:102677146-102677147 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs34637102 | chr1:102677169-102677170 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs72735523 | chr1:102677189-102677190 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs114791373 | chr1:102677202-102677203 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs577038845 | chr1:102677209-102677210 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs115646395 | chr1:102677221-102677222 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs182368009 | chr1:102677250-102677251 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs544718565 | chr1:102677272-102677273 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs1938357 | chr1:102677298-102677299 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs188833709 | chr1:102677300-102677301 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs78345241 | chr1:102677301-102677302 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs527794799 | chr1:102677307-102677308 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs552139688 | chr1:102677337-102677338 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs570780474 | chr1:102677352-102677353 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs1938356 | chr1:102677370-102677371 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs568632897 | chr1:102677461-102677462 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs116749874 | chr1:102677511-102677512 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs12094474 | chr1:102677531-102677532 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs566191850 | chr1:102677546-102677547 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs147684122 | chr1:102677564-102677565 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs373829705 | chr1:102677580-102677581 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs371750972 | chr1:102698607-102698608 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs559086390 | chr1:102698627-102698628 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs376506904 | chr1:102698628-102698629 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs186940537 | chr1:102698643-102698644 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs114557468 | chr1:102698648-102698649 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Coronary Disease | 20032323 | CNVD |
Prostate cancer | 21965145 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Stargardt''s disease | 17277736 | CNVD |
Neuroblastoma | 17897457 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Non-syndromic sensorineural hearing loss | 22290220 | CNVD |
Liposarcoma | 21253554 | CNVD |
Breast cancer | 21264507 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Astrocytoma | 17387387 | CNVD |
Cancer | 21499728 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Papillary thyroid carcinoma | 21436994 | CNVD |
Neuroblastoma | 17535989 | CNVD |
Pheochromocytoma | 17535989 | CNVD |
Prostate cancer | 16705090 | CNVD |
Astrocytoma | 17934521 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Breast cancer | 17603634 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Schizophrenia | 19415332 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Autism | 22495311 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Chordoma | 21602918 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
Melanoma | 18172304 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Cancer | 21129771 | CNVD |
Autosomal dominant nocturnal frontal lobe epilepsy | 18472482 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Thrombocytopenia-absent radius syndrome | 21933853 | CNVD |
Psychiatric disorder | 22848183 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 20409316 | CNVD |
Lung cancer | 18438408 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 17393978 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Cervical cancer | 21062161 | CNVD |
Cancer | 21183584 | CNVD |
Breast cancer | 21785460 | CNVD |
Breast cancer | 21364760 | CNVD |
Rett syndrome | 21593744 | CNVD |
Prostate cancer | 16573809 | CNVD |
Breast cancer | 16608533 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Cancer | 22429812 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Autism | 17483303 | CNVD |
Intestinal disease | 21956041 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Schizophrenia | 17879154 | CNVD |
Mental retardation | 17124404 | CNVD |
Intestinal disease | 17828263 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Lung squamous cell carcinoma | 22363434 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Immune disease | 21076436 | CNVD |
Immune disease | 21042300 | CNVD |
Lung cancer | 17086460 | CNVD |
Gastric cancer | 16891809 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:102676600-102677000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr1:102676800-102677600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr1:102698600-102699000 | Enhancers | Dnd41 | blood |
4 | chr1:102699000-102700400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
5 | chr1:102699600-102700800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
6 | chr1:102700400-102700800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
7 | chr1:102700400-102701000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
8 | chr1:102707200-102707800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
9 | chr1:102707200-102707800 | Enhancers | GM12878-XiMat | blood |
10 | chr1:102718000-102719200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
11 | chr1:102718400-102719400 | Enhancers | Fetal Heart | heart |
12 | chr1:102728400-102728800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
13 | chr1:102749400-102749800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
14 | chr1:102749800-102750800 | Genic enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
15 | chr1:102750800-102751400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
16 | chr1:102778200-102778600 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
17 | chr1:102791800-102792000 | Enhancers | Pancreas | Pancrea |