Variant report
Variant | nsv998043 |
---|---|
Chromosome Location | chr4:9496282-9830208 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2975)
- CpG islands (count:5194)
- Chromatin interactive region (count:41)
- LncRNA region (count:13)
- Mature miRNA region (count: 1)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr4:9705188-9705304 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr4:9764889-9764976 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr4:9693437-9693703 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr4:9758253-9758343 | K562 | blood: | n/a | n/a |
5 | ATF2 | chr4:9814641-9815054 | GM12878 | blood: | n/a | n/a |
6 | ATF2 | chr4:9809744-9810072 | GM12878 | blood: | n/a | n/a |
7 | ATF2 | chr4:9764713-9765001 | GM12878 | blood: | n/a | n/a |
8 | BACH1 | chr4:9689846-9689882 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr4:9784048-9784153 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BACH1 | chr4:9533750-9534097 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | BACH1 | chr4:9605857-9606056 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BACH1 | chr4:9806067-9806321 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BATF | chr4:9637521-9637725 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr4:9814682-9815071 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr4:9511904-9512243 | GM12878 | blood: | n/a | n/a |
16 | BATF | chr4:9697635-9697868 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr4:9661377-9661663 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr4:9606359-9606745 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr4:9661312-9661676 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr4:9809777-9810086 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr4:9560693-9560899 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr4:9609959-9610276 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr4:9560631-9560870 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr4:9606281-9606749 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr4:9582818-9583030 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr4:9715614-9715953 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr4:9813621-9813815 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr4:9814742-9814999 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr4:9511928-9512224 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr4:9609924-9610228 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr4:9605704-9606128 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr4:9709684-9709950 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr4:9779146-9779367 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr4:9709608-9710002 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr4:9496997-9497347 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr4:9547853-9548038 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr4:9582796-9583040 | GM12878 | blood: | n/a | n/a |
38 | BCL11A | chr4:9693955-9694191 | GM12878 | blood: | n/a | n/a |
39 | BCL11A | chr4:9606478-9606683 | GM12878 | blood: | n/a | n/a |
40 | BCL11A | chr4:9814557-9814998 | GM12878 | blood: | n/a | n/a |
41 | BCL11A | chr4:9605779-9606088 | GM12878 | blood: | n/a | n/a |
42 | BCL11A | chr4:9637557-9637806 | GM12878 | blood: | n/a | n/a |
43 | BCL11A | chr4:9809742-9810117 | GM12878 | blood: | n/a | n/a |
44 | BCL11A | chr4:9497025-9497432 | GM12878 | blood: | n/a | chr4:9497121-9497129 |
45 | BCL11A | chr4:9606348-9606693 | GM12878 | blood: | n/a | n/a |
46 | BCL11A | chr4:9605814-9606174 | GM12878 | blood: | n/a | n/a |
47 | BCL11A | chr4:9661303-9661712 | GM12878 | blood: | n/a | n/a |
48 | BCL11A | chr4:9814677-9815008 | GM12878 | blood: | n/a | n/a |
49 | BCL11A | chr4:9609991-9610319 | GM12878 | blood: | n/a | n/a |
50 | BCL11A | chr4:9609970-9610277 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:9509830-9509880 | AG09309 | skin: | n/a |
2 | chr4:9558077-9558127 | SK-N-MC | brain: | n/a |
3 | chr4:9534388-9534438 | MCF10A-Er-Src | breast: | n/a |
4 | chr4:9508890-9508940 | HEK293 | kidney: | embryo |
5 | chr4:9693516-9693566 | AG10803 | skin: | n/a |
6 | chr4:9602138-9602188 | HCPEpiC | choroid plexus: | n/a |
7 | chr4:9689364-9689414 | CMK | blood: | n/a |
8 | chr4:9783246-9783296 | GM06990 | blood: | n/a |
9 | chr4:9693516-9693566 | MCF-7 | breast: | n/a |
10 | chr4:9509830-9509880 | AG09309 | skin: | n/a |
11 | chr4:9558077-9558127 | SK-N-MC | brain: | n/a |
12 | chr4:9534388-9534438 | MCF10A-Er-Src | breast: | n/a |
13 | chr4:9508890-9508940 | HEK293 | kidney: | embryo |
14 | chr4:9693516-9693566 | AG10803 | skin: | n/a |
15 | chr4:9602138-9602188 | HCPEpiC | choroid plexus: | n/a |
16 | chr4:9689364-9689414 | CMK | blood: | n/a |
17 | chr4:9783246-9783296 | GM06990 | blood: | n/a |
18 | chr4:9693516-9693566 | MCF-7 | breast: | n/a |
19 | chr4:9505698-9505748 | HCT-116 | colon: | n/a |
20 | chr4:9661405-9661455 | HUVEC | blood vessel: | n/a |
21 | chr4:9510286-9510336 | PrEC | prostate: | n/a |
22 | chr4:9506681-9506731 | PANC-1 | pancreas: | n/a |
23 | chr4:9534062-9534112 | NHBE | bronchial: | n/a |
24 | chr4:9533948-9533998 | SK-N-MC | brain: | n/a |
25 | chr4:9707741-9707791 | SK-N-MC | brain: | n/a |
26 | chr4:9503404-9503454 | AoSMC | blood vessel: | n/a |
27 | chr4:9508177-9508227 | HepG2 | liver: | n/a |
28 | chr4:9693329-9693379 | U87 | brain: | n/a |
29 | chr4:9510572-9510622 | H1-hESC | embryonic stem cell: | embryo |
30 | chr4:9692836-9692886 | HL-60 | blood: | n/a |
31 | chr4:9693764-9693814 | HIPEpiC | eye: | n/a |
32 | chr4:9510286-9510336 | AG09319 | gingival: | n/a |
33 | chr4:9523653-9523703 | ovcar-3 | ovarian: | n/a |
34 | chr4:9523635-9523685 | U87 | brain: | n/a |
35 | chr4:9500174-9500224 | Caco-2 | colon: | n/a |
36 | chr4:9661422-9661472 | SKMC | muscle: | n/a |
37 | chr4:9782931-9782981 | GM12891 | blood: | n/a |
38 | chr4:9503404-9503454 | ProgFib | skin: | n/a |
39 | chr4:9604780-9604830 | NHDF-neo | bronchial: | n/a |
40 | chr4:9508890-9508940 | HRE | kidney: | n/a |
41 | chr4:9508177-9508227 | Hepatocyte | liver: | n/a |
42 | chr4:9533426-9533476 | GM19239 | blood: | n/a |
43 | chr4:9762166-9762216 | IMR90 | lung: | fetal |
44 | chr4:9693764-9693814 | Hepatocyte | liver: | n/a |
45 | chr4:9534313-9534363 | SKMC | muscle: | n/a |
46 | chr4:9508890-9508940 | NT2-D1 | testis: | n/a |
47 | chr4:9509896-9509946 | LNCaP | prostate: | n/a |
48 | chr4:9514840-9514890 | BJ | skin: | n/a |
49 | chr4:9499367-9499417 | MCF10A-Er-Src | breast: | n/a |
50 | chr4:9661405-9661455 | AG04449 | skin: | fetal |
(count:41 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:9766226..9767390-chr4:9899951..9901032,8 | MCF-7 | breast: | |
2 | chr2:91815622..91818416-chr4:9765055..9766802,2 | K562 | blood: | |
3 | chr2:91815162..91820044-chr4:9763391..9768700,25 | MCF-7 | breast: | |
4 | chr4:9764370..9765339-chr4:10015197..10016013,4 | MCF-7 | breast: | |
5 | chr1:149221736..149225365-chr4:9763717..9766826,4 | MCF-7 | breast: | |
6 | chr2:91817635..91819182-chr4:9766044..9767255,9 | MCF-7 | breast: | |
7 | chr4:9764793..9765717-chr4:10015113..10016017,3 | MCF-7 | breast: | |
8 | chr4:9699934..9701585-chr4:10019007..10021805,2 | K562 | blood: | |
9 | chr4:9764866..9765415-chr4:9928949..9929492,2 | MCF-7 | breast: | |
10 | chr4:9765483..9767943-chr4:10007316..10009788,2 | MCF-7 | breast: | |
11 | chr2:91816443..91817305-chr4:9764390..9765414,6 | MCF-7 | breast: | |
12 | chr4:4147498..4148004-chr4:9497288..9497793,2 | MCF-7 | breast: | |
13 | chr2:91818675..91820415-chr4:9765033..9768552,3 | K562 | blood: | |
14 | chr4:9533415..9534346-chr4:9660887..9661684,2 | MCF-7 | breast: | |
15 | chr4:9704779..9705714-chr4:10015117..10016069,5 | MCF-7 | breast: | |
16 | chr2:91816400..91817015-chr4:9766701..9767270,2 | MCF-7 | breast: | |
17 | chr4:9770192..9773137-chr4:10024212..10026749,2 | K562 | blood: | |
18 | chr4:9705037..9705657-chr4:9778184..9778690,2 | K562 | blood: | |
19 | chr4:9764437..9765430-chr4:10020023..10020916,6 | MCF-7 | breast: | |
20 | chr4:9764417..9765133-chr4:10016121..10017439,5 | MCF-7 | breast: | |
21 | chr4:9764445..9765327-chr4:10020033..10020988,3 | K562 | blood: | |
22 | chr4:9827283..9829135-chr4:9829200..9831465,2 | K562 | blood: | |
23 | chr4:9766486..9767204-chr4:10064960..10065893,2 | MCF-7 | breast: | |
24 | chr1:149220703..149225113-chr4:9764948..9767069,4 | MCF-7 | breast: | |
25 | chr2:91816088..91820118-chr4:9765029..9767622,10 | MCF-7 | breast: | |
26 | chr4:9764792..9765537-chr4:9899989..9900954,5 | MCF-7 | breast: | |
27 | chr2:91816303..91817383-chr4:9764391..9765414,6 | MCF-7 | breast: | |
28 | chr4:9761130..9763005-chr4:9988480..9990175,2 | K562 | blood: | |
29 | chr2:91815178..91817122-chr4:9765055..9766792,2 | K562 | blood: | |
30 | chr2:91818108..91819097-chr4:9766527..9767180,2 | K562 | blood: | |
31 | chr4:9766848..9767385-chr4:9900038..9900893,4 | MCF-7 | breast: | |
32 | chr4:9763456..9766236-chr4:10014004..10016919,3 | K562 | blood: | |
33 | chr4:9766550..9767471-chr4:10020110..10020837,2 | MCF-7 | breast: | |
34 | chr4:9705037..9705657-chr4:9778184..9778690,2 | K562 | blood: | |
35 | chr4:9764428..9765300-chr4:10016550..10017565,3 | K562 | blood: | |
36 | chr4:9704873..9705750-chr4:10016280..10017221,3 | K562 | blood: | |
37 | chr4:9766485..9767197-chr4:10016698..10017481,2 | MCF-7 | breast: | |
38 | chr4:9705013..9706114-chr4:10020117..10020881,3 | MCF-7 | breast: | |
39 | chr4:4147469..4148009-chr4:9497278..9497791,2 | MCF-7 | breast: | |
40 | chr2:91818363..91818948-chr4:9766445..9767270,6 | MCF-7 | breast: | |
41 | chr4:9533415..9534346-chr4:9660887..9661684,2 | MCF-7 | breast: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-SLC2A9-1 | chr4:9691882-9692319 | XLOC_003881 |
2 | lnc-SLC2A9-2 | chr4:9693361-9693365 | XLOC_003880 |
3 | lnc-DRD5-13 | chr4:9807330-9807762 | NONHSAT095145 |
4 | lnc-RP11-1396O13.13.1-3 | chr4:9555234-9555605 | NONHSAT095137 |
5 | lnc-DRD5-13 | chr4:9814207-9814604 | NONHSAT095145 |
6 | lnc-DRD5-13 | chr4:9810799-9811038 | NONHSAT095145 |
7 | lnc-SLC2A9-1 | chr4:9686325-9686330 | XLOC_003881 |
8 | lnc-DRD5-15 | chr4:9680112-9680551 | l_2602_chr4:9680111-9682135_thyroid |
9 | lnc-DRD5-16 | chr4:9678932-9679558 | NONHSAT095141 |
10 | lnc-SLC2A9-6 | chr4:9680180-9680546 | l_2603_chr4:9680179-9682164_kidney |
11 | lnc-SLC2A9-2 | chr4:9682416-9682671 | XLOC_003880 |
12 | lnc-DRD5-15 | chr4:9681973-9682135 | l_2602_chr4:9680111-9682135_thyroid |
13 | lnc-SLC2A9-6 | chr4:9681968-9682164 | l_2603_chr4:9680179-9682164_kidney |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-548i | chr4:9557878-9557899 | MIMAT0005935_1 |
No data |
Variant related genes | Relation type |
---|---|
RNA5SP154 | TF binding region |
ENSG00000249799 | TF binding region |
DRD5 | TF binding region |
ENPP7P11 | TF binding region |
MIR548I2 | TF binding region |
FAM86MP | TF binding region |
ENSG00000249443 | TF binding region |
ENSG00000249563 | TF binding region |
OR7E83P | TF binding region |
ALG1L3P | TF binding region |
ENSG00000265901 | TF binding region |
ENSG00000242034 | TF binding region |
OR7E35P | TF binding region |
SLC2A9 | TF binding region |
ENSG00000244004 | TF binding region |
RNA5SP154 | CpG island |
ENSG00000249799 | CpG island |
DRD5 | CpG island |
ENPP7P11 | CpG island |
MIR548I2 | CpG island |
FAM86MP | CpG island |
ENSG00000249443 | CpG island |
ENSG00000249563 | CpG island |
OR7E83P | CpG island |
ALG1L3P | CpG island |
ENSG00000265901 | CpG island |
ENSG00000242034 | CpG island |
OR7E35P | CpG island |
SLC2A9 | CpG island |
ENSG00000244004 | CpG island |
ENSG00000109667 | chromatin interactions |
ENSG00000250413 | chromatin interactions |
ENSG00000206737 | chromatin interactions |
FBXW7 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs536944278 | chr4:9496283-9496284 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs75363200 | chr4:9496293-9496294 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs548929310 | chr4:9496298-9496299 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs78199215 | chr4:9496303-9496304 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs569654310 | chr4:9496304-9496305 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs185499878 | chr4:9496307-9496308 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs553255015 | chr4:9496311-9496312 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs148246352 | chr4:9496314-9496315 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs576819493 | chr4:9496319-9496320 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs4974887 | chr4:9496343-9496344 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
11 | rs368640614 | chr4:9496347-9496348 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs542036092 | chr4:9496357-9496358 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs78113550 | chr4:9496371-9496372 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs386671486 | chr4:9496389-9496390 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs146525859 | chr4:9496391-9496392 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs188300165 | chr4:9496426-9496427 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs116426371 | chr4:9496460-9496461 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs565291141 | chr4:9496461-9496462 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs181800228 | chr4:9496470-9496471 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs561466664 | chr4:9496477-9496478 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs115875634 | chr4:9496490-9496491 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs559671214 | chr4:9496492-9496493 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs186506008 | chr4:9496497-9496498 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs548817750 | chr4:9496502-9496503 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs2049543 | chr4:9496515-9496516 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
26 | rs191746345 | chr4:9496517-9496518 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs367591137 | chr4:9496535-9496536 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs183572039 | chr4:9496554-9496555 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs10019949 | chr4:9496569-9496570 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs186481399 | chr4:9496584-9496585 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs199563513 | chr4:9496587-9496588 | ZNF genes & repeats Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs10017204 | chr4:9496607-9496608 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs567829759 | chr4:9496613-9496614 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs535243356 | chr4:9496623-9496624 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs139110070 | chr4:9496638-9496639 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs55748497 | chr4:9496656-9496657 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs372127987 | chr4:9496661-9496662 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs558678671 | chr4:9496664-9496665 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs182528210 | chr4:9496674-9496675 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs386671487 | chr4:9496682-9496683 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs559765379 | chr4:9496683-9496684 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs191353331 | chr4:9496684-9496685 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs183153243 | chr4:9496691-9496692 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs10006179 | chr4:9496692-9496693 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs376715651 | chr4:9496695-9496696 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs55706196 | chr4:9496699-9496700 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs74496625 | chr4:9496701-9496702 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs532332262 | chr4:9496721-9496722 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs552859642 | chr4:9496728-9496729 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs570334782 | chr4:9496729-9496730 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17603634 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Breast cancer | 21509527 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autosomal-dominant microtia | 18179897 | CNVD |
Glioma | 17123091 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Breast cancer | 17133270 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Breast cancer | 22522925 | CNVD |
Schizophrenia | 23813976 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Sinonasal adenocarcinoma | 21360264 | CNVD |
Ependymoma | 20639864 | CNVD |
Breast cancer | 17142309 | CNVD |
Glioma | 20126413 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:9484800-9503800 | Weak transcription | Right Atrium | heart |
2 | chr4:9495800-9496800 | Enhancers | Fetal Thymus | thymus |
3 | chr4:9496200-9496800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
4 | chr4:9496200-9496800 | Enhancers | Thymus | Thymus |
5 | chr4:9496200-9497000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
6 | chr4:9496400-9496600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
7 | chr4:9496400-9496800 | Enhancers | Primary hematopoietic stem cells | blood |
8 | chr4:9496600-9499000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
9 | chr4:9496800-9499600 | Weak transcription | Primary hematopoietic stem cells | blood |
10 | chr4:9499000-9499200 | Bivalent Enhancer | ES-I3 Cell Line | embryonic stem cell |
11 | chr4:9499000-9499200 | Flanking Bivalent TSS/Enh | iPS-15b Cell Line | embryonic stem cell |
12 | chr4:9499000-9499600 | Enhancers | Liver | Liver |
13 | chr4:9499000-9500400 | Bivalent/Poised TSS | iPS-20b Cell Line | embryonic stem cell |
14 | chr4:9499000-9500600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
15 | chr4:9499200-9499400 | Bivalent Enhancer | Fetal Thymus | thymus |
16 | chr4:9499200-9499600 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
17 | chr4:9499200-9499800 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
18 | chr4:9499200-9499800 | Bivalent/Poised TSS | Brain Inferior Temporal Lobe | brain |
19 | chr4:9499200-9500200 | Bivalent Enhancer | Primary hematopoietic stem cells short term culture | blood |
20 | chr4:9499200-9500200 | Bivalent Enhancer | Adipose Nuclei | Adipose |
21 | chr4:9499200-9500400 | Bivalent/Poised TSS | HUES48 Cell Line | embryonic stem cell |
22 | chr4:9499200-9500400 | Active TSS | iPS DF 6.9 Cell Line | embryonic stem cell |
23 | chr4:9499200-9500600 | Active TSS | H9 Cell Line | embryonic stem cell |
24 | chr4:9499200-9500600 | Bivalent/Poised TSS | HUES6 Cell Line | embryonic stem cell |
25 | chr4:9499200-9500600 | Bivalent/Poised TSS | HUES64 Cell Line | embryonic stem cell |
26 | chr4:9499200-9500600 | Bivalent/Poised TSS | iPS-15b Cell Line | embryonic stem cell |
27 | chr4:9499200-9500600 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
28 | chr4:9499400-9499600 | Active TSS | Ganglion Eminence derived primary cultured neurospheres | brain |
29 | chr4:9499400-9499600 | Bivalent/Poised TSS | Foreskin Fibroblast Primary Cells skin02 | Skin |
30 | chr4:9499400-9499600 | Active TSS | Brain Germinal Matrix | brain |
31 | chr4:9499400-9499600 | Enhancers | Colonic Mucosa | Colon |
32 | chr4:9499400-9499600 | Active TSS | Fetal Brain Female | brain |
33 | chr4:9499400-9499800 | Bivalent/Poised TSS | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
34 | chr4:9499400-9499800 | Enhancers | Lung | lung |
35 | chr4:9499400-9500200 | Bivalent/Poised TSS | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
36 | chr4:9499400-9500400 | Bivalent/Poised TSS | iPS-18 Cell Line | embryonic stem cell |
37 | chr4:9499400-9500400 | Active TSS | ES-UCSF4 Cell Line | embryonic stem cell |
38 | chr4:9499400-9500600 | Bivalent/Poised TSS | H1 Cell Line | embryonic stem cell |
39 | chr4:9499600-9499800 | Flanking Active TSS | Ganglion Eminence derived primary cultured neurospheres | brain |
40 | chr4:9499600-9499800 | Flanking Bivalent TSS/Enh | Foreskin Fibroblast Primary Cells skin02 | Skin |
41 | chr4:9499600-9499800 | Flanking Bivalent TSS/Enh | Foreskin Keratinocyte Primary Cells skin02 | Skin |
42 | chr4:9499600-9499800 | Bivalent/Poised TSS | Fetal Intestine Large | intestine |
43 | chr4:9499600-9499800 | Bivalent Enhancer | Fetal Lung | lung |
44 | chr4:9499600-9500000 | Active TSS | Primary T cells from cord blood | blood |
45 | chr4:9499600-9500000 | Enhancers | Sigmoid Colon | Sigmoid Colon |
46 | chr4:9499600-9500200 | Bivalent/Poised TSS | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
47 | chr4:9499600-9500200 | Bivalent/Poised TSS | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
48 | chr4:9499600-9500200 | Flanking Bivalent TSS/Enh | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
49 | chr4:9499600-9500200 | Flanking Bivalent TSS/Enh | Brain Germinal Matrix | brain |
50 | chr4:9499600-9500200 | Bivalent Enhancer | Brain Hippocampus Middle | brain |