Variant report

Variant	nsv999335
Chromosome Location	chr3:121100283-121408766
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2377)
CpG islands
(count:2564)
Chromatin interactive
region (count:114)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:2377 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:121265480-121265882	K562	blood:	n/a	n/a
2	ARID3A	chr3:121361606-121361746	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:121293291-121293628	K562	blood:	n/a	n/a
4	ARID3A	chr3:121264632-121265235	K562	blood:	n/a	n/a
5	ARID3A	chr3:121316377-121316483	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:121316361-121316430	K562	blood:	n/a	n/a
7	ARID3A	chr3:121293415-121293609	HepG2	liver:	n/a	n/a
8	ARID3A	chr3:121264757-121265250	HepG2	liver:	n/a	n/a
9	ARID3A	chr3:121265453-121265941	HepG2	liver:	n/a	n/a
10	ATF1	chr3:121293341-121293636	K562	blood:	n/a	n/a
11	ATF2	chr3:121379019-121380056	GM12878	blood:	n/a	n/a
12	ATF2	chr3:121311633-121312689	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF2	chr3:121150918-121151361	GM12878	blood:	n/a	n/a
14	ATF2	chr3:121267479-121267985	GM12878	blood:	n/a	n/a
15	ATF2	chr3:121150837-121151409	GM12878	blood:	n/a	n/a
16	ATF2	chr3:121311674-121312713	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr3:121264597-121265169	GM12878	blood:	n/a	n/a
18	ATF2	chr3:121267420-121267944	GM12878	blood:	n/a	n/a
19	ATF2	chr3:121373211-121373782	GM12878	blood:	n/a	n/a
20	ATF2	chr3:121265572-121266011	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr3:121379094-121380020	GM12878	blood:	n/a	n/a
22	ATF2	chr3:121264561-121265245	GM12878	blood:	n/a	n/a
23	ATF3	chr3:121312116-121312453	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF3	chr3:121264594-121265142	A549	lung:	n/a	chr3:121264846-121264855
25	ATF3	chr3:121293358-121293722	K562	blood:	n/a	n/a
26	BACH1	chr3:121370567-121370886	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr3:121182712-121182826	K562	blood:	n/a	n/a
28	BACH1	chr3:121163484-121163523	K562	blood:	n/a	n/a
29	BACH1	chr3:121293357-121293710	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr3:121311672-121312712	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr3:121370532-121370903	K562	blood:	n/a	n/a
32	BATF	chr3:121267535-121267976	GM12878	blood:	n/a	n/a
33	BATF	chr3:121373309-121373740	GM12878	blood:	n/a	n/a
34	BATF	chr3:121373310-121373733	GM12878	blood:	n/a	n/a
35	BATF	chr3:121151014-121151263	GM12878	blood:	n/a	n/a
36	BATF	chr3:121267576-121267909	GM12878	blood:	n/a	n/a
37	BCL3	chr3:121271688-121271931	GM12878	blood:	n/a	n/a
38	BCLAF1	chr3:121373301-121373736	GM12878	blood:	n/a	n/a
39	BCLAF1	chr3:121379038-121380039	GM12878	blood:	n/a	n/a
40	BCLAF1	chr3:121264580-121265251	GM12878	blood:	n/a	n/a
41	BCLAF1	chr3:121378976-121380116	GM12878	blood:	n/a	n/a
42	BCLAF1	chr3:121267517-121268093	GM12878	blood:	n/a	n/a
43	BCLAF1	chr3:121150752-121151398	GM12878	blood:	n/a	n/a
44	BCLAF1	chr3:121264518-121265140	GM12878	blood:	n/a	n/a
45	BCLAF1	chr3:121373280-121373842	GM12878	blood:	n/a	n/a
46	BHLHE40	chr3:121264738-121264916	K562	blood:	n/a	n/a
47	BHLHE40	chr3:121356973-121357138	GM12878	blood:	n/a	n/a
48	BHLHE40	chr3:121264707-121265217	GM12878	blood:	n/a	n/a
49	BHLHE40	chr3:121267547-121267919	GM12878	blood:	n/a	n/a
50	BRCA1	chr3:121264554-121265265	Hela-S3	cervix:	n/a	n/a

(count:2564 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:121286820-121286870	NT2-D1	testis:	n/a
2	chr3:121307887-121307937	NB4	blood:	n/a
3	chr3:121286820-121286870	NT2-D1	testis:	n/a
4	chr3:121307887-121307937	NB4	blood:	n/a
5	chr3:121286820-121286870	BJ	skin:	n/a
6	chr3:121264278-121264328	NB4	blood:	n/a
7	chr3:121264201-121264251	SK-N-SH	brain:	n/a
8	chr3:121311075-121311125	PrEC	prostate:	n/a
9	chr3:121264929-121264979	HEK293	kidney:	embryo
10	chr3:121264201-121264251	Caco-2	colon:	n/a
11	chr3:121285706-121285756	HRPEpiC	eye:	n/a
12	chr3:121380792-121380842	HepG2	liver:	n/a
13	chr3:121379745-121379795	SKMC	muscle:	n/a
14	chr3:121380533-121380583	K562	blood:	n/a
15	chr3:121262243-121262293	PANC-1	pancreas:	n/a
16	chr3:121280760-121280810	NH-A	brain:	n/a
17	chr3:121285779-121285829	Hela-S3	cervix:	n/a
18	chr3:121286563-121286613	HL-60	blood:	n/a
19	chr3:121380233-121380283	BJ	skin:	n/a
20	chr3:121264201-121264251	HL-60	blood:	n/a
21	chr3:121264942-121264992	MCF-7	breast:	n/a
22	chr3:121265726-121265776	T-47D	breast:	n/a
23	chr3:121363104-121363154	HepG2	liver:	n/a
24	chr3:121380236-121380286	NT2-D1	testis:	n/a
25	chr3:121196810-121196860	IMR90	lung:	fetal
26	chr3:121265395-121265445	A549	lung:	n/a
27	chr3:121285779-121285829	NHDF-neo	bronchial:	n/a
28	chr3:121312241-121312291	HMEC	breast:	n/a
29	chr3:121287348-121287398	HCM	heart:	n/a
30	chr3:121312241-121312291	PFSK-1	brain:	n/a
31	chr3:121264538-121264588	RPTEC	kidney:	n/a
32	chr3:121286354-121286404	SAEC	small airway:	n/a
33	chr3:121142525-121142575	GM19239	blood:	n/a
34	chr3:121380233-121380283	GM12891	blood:	n/a
35	chr3:121379791-121379841	HepG2	liver:	n/a
36	chr3:121379777-121379827	PrEC	prostate:	n/a
37	chr3:121311075-121311125	HRCEpiC	kidney:	n/a
38	chr3:121312164-121312214	NHBE	bronchial:	n/a
39	chr3:121379791-121379841	Jurkat	blood:	n/a
40	chr3:121150715-121150765	HEEpiC	esophagus:	n/a
41	chr3:121379791-121379841	HEEpiC	esophagus:	n/a
42	chr3:121262243-121262293	ProgFib	skin:	n/a
43	chr3:121379745-121379795	A549	lung:	n/a
44	chr3:121264844-121264894	GM06990	blood:	n/a
45	chr3:121307887-121307937	HMEC	breast:	n/a
46	chr3:121264942-121264992	IMR90	lung:	fetal
47	chr3:121286563-121286613	GM12892	blood:	n/a
48	chr3:121264278-121264328	ovcar-3	ovarian:	n/a
49	chr3:121264538-121264588	GM06990	blood:	n/a
50	chr3:121265395-121265445	SK-N-SH	brain:	n/a

(count:114 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr3:121261975..121264944-chr3:121467360..121470216,3	K562	blood:
2	chr3:121264298..121266034-chr3:122100794..122102974,2	MCF-7	breast:
3	chr3:121152758..121154352-chr3:121155971..121158501,2	MCF-7	breast:
4	chr3:121249276..121252211-chr3:121260575..121262874,2	MCF-7	breast:
5	chr3:121257674..121260535-chr3:121261894..121265462,3	MCF-7	breast:
6	chr3:121325183..121326691-chr3:121327746..121330379,2	K562	blood:
7	chr3:121228286..121231093-chr3:121234825..121237774,2	K562	blood:
8	chr3:121271397..121273219-chr3:122101468..122103033,2	K562	blood:
9	chr3:121402372..121403987-chr3:121435580..121437205,2	MCF-7	breast:
10	chr3:121264864..121267091-chr3:122101354..122103102,2	MCF-7	breast:
11	chr17:60095074..60095939-chr3:121314935..121315693,2	MCF-7	breast:
12	chr3:121344119..121346108-chr3:121348732..121350963,2	K562	blood:
13	chr3:121181463..121184397-chr3:121190122..121192546,2	K562	blood:
14	chr3:121190756..121192749-chr3:121194520..121196467,2	K562	blood:
15	chr3:121262548..121264431-chr3:121401420..121403788,2	K562	blood:
16	chr3:121143314..121145833-chr3:121149976..121152815,2	MCF-7	breast:
17	chr3:121121830..121124199-chr3:121125934..121129748,5	K562	blood:
18	chr3:121264895..121265445-chr3:121468081..121468931,2	HCT-116	colon:
19	chr3:121216865..121219603-chr3:121221676..121223246,2	MCF-7	breast:
20	chr3:121121830..121124199-chr3:121125934..121129748,5	K562	blood:
21	chr1:145382746..145383629-chr3:121264432..121265003,2	Hela-S3	cervix:
22	chr3:121138259..121140292-chr3:121185745..121188174,2	K562	blood:
23	chr3:121138259..121140292-chr3:121185745..121188174,2	K562	blood:
24	chr3:121205722..121207237-chr3:121210537..121212477,2	K562	blood:
25	chr3:121298924..121301111-chr3:121307868..121309748,2	MCF-7	breast:
26	chr3:121248468..121250741-chr3:121250884..121254091,3	K562	blood:
27	chr3:121206534..121207799-chr3:121247617..121248857,4	MCF-7	breast:
28	chr3:121242146..121244903-chr3:121250057..121252456,2	K562	blood:
29	chr3:121381533..121383209-chr3:121385289..121388100,2	MCF-7	breast:
30	chr3:121262548..121264431-chr3:121401420..121403788,2	K562	blood:
31	chr3:121378883..121381780-chr3:121382077..121384890,2	K562	blood:
32	chr3:121265150..121267222-chr3:121267374..121269393,2	K562	blood:
33	chr3:121251819..121253772-chr3:121257661..121259674,3	K562	blood:
34	chr3:121377179..121379153-chr3:121573085..121574882,2	MCF-7	breast:
35	chr3:121242146..121244586-chr3:121250057..121252591,2	K562	blood:
36	chr3:121265697..121266207-chr3:122977401..122978341,2	K562	blood:
37	chr3:121264839..121267237-chr3:122281910..122284575,2	MCF-7	breast:
38	chr3:121228286..121231093-chr3:121234825..121237774,2	K562	blood:
39	chr3:121205722..121207237-chr3:121210537..121212477,2	K562	blood:
40	chr3:121158690..121160312-chr3:121166384..121168910,2	K562	blood:
41	chr3:121263260..121265570-chr3:121468289..121470216,2	K562	blood:
42	chr3:121344119..121346108-chr3:121348732..121350963,2	K562	blood:
43	chr3:121380202..121382389-chr3:121387909..121390057,2	K562	blood:
44	chr3:121125400..121127225-chr3:121128769..121131952,3	K562	blood:
45	chr3:121122561..121125182-chr3:121127949..121129748,3	K562	blood:
46	chr3:121263491..121265604-chr3:121269317..121270972,2	K562	blood:
47	chr3:121135285..121138210-chr3:121139443..121141521,3	K562	blood:
48	chr3:121339257..121341104-chr3:121379300..121381638,2	K562	blood:
49	chr3:121134688..121138349-chr3:121139086..121141700,5	K562	blood:
50	chr3:121256672..121259266-chr3:121264172..121266746,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLQ-1	chr3:121295924-121296127	expReg_chr3_8545_-
2	lnc-GOLGB1-1	chr3:121379667-121379750	NONHSAT091478
3	lnc-GOLGB1-2	chr3:121372843-121373143	NONHSAT091474
4	lnc-GOLGB1-1	chr3:121376829-121377194	NONHSAT091478

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GOLGB1	hsa-miR-197-3p	chr3:121382120-121382141
2	GOLGB1	hsa-miR-197-3p	chr3:121382796-121382817

Variant related genes	Relation type
ENSG00000238670	TF binding region
RNU4-62P	TF binding region
RN7SL172P	TF binding region
POLQ	TF binding region
RPL7AP11	TF binding region
HCLS1	TF binding region
GOLGB1	TF binding region
ARGFX	TF binding region
FBXO40	TF binding region
ENSG00000238670	CpG island
RNU4-62P	CpG island
RN7SL172P	CpG island
POLQ	CpG island
RPL7AP11	CpG island
HCLS1	CpG island
GOLGB1	CpG island
ARGFX	CpG island
FBXO40	CpG island
ENSG00000222057	chromatin interactions
ENSG00000163840	chromatin interactions
ENSG00000160124	chromatin interactions
ENSG00000143458	chromatin interactions
ENSG00000051341	chromatin interactions
ENSG00000173230	chromatin interactions
ENSG00000173193	chromatin interactions
ENSG00000201558	chromatin interactions
ENSG00000186103	chromatin interactions
ENSG00000167632	chromatin interactions
ENSG00000114023	chromatin interactions
ENSG00000233625	chromatin interactions
ENSG00000180353	chromatin interactions
ENSG00000138496	chromatin interactions

Extended variants
information (count: 11721 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:11721 , 50 per page) page: 1 2 3 4 5 6 7 ... 235

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17740066	chr3:121100283-121100284	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
2	rs371256988	chr3:121100291-121100292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs202096195	chr3:121100311-121100312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs535446894	chr3:121100333-121100334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs374960778	chr3:121100353-121100354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs554915557	chr3:121100392-121100393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199793824	chr3:121100395-121100396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs367604952	chr3:121100398-121100399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201445931	chr3:121100399-121100400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs17740072	chr3:121100414-121100415	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs551774336	chr3:121100439-121100440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374599434	chr3:121100445-121100446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186968812	chr3:121100469-121100470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150267159	chr3:121100524-121100525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368605264	chr3:121100532-121100533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543578137	chr3:121100628-121100629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372064718	chr3:121100670-121100671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs74466045	chr3:121100684-121100685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138913340	chr3:121100694-121100695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs190762337	chr3:121100735-121100736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182585926	chr3:121100768-121100769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113157737	chr3:121100783-121100784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs185777756	chr3:121100833-121100834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs552101136	chr3:121100902-121100903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189707174	chr3:121100904-121100905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs34239616	chr3:121100951-121100952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs571899685	chr3:121100958-121100959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537636731	chr3:121100959-121100960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550861154	chr3:121100960-121100961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs533995235	chr3:121100976-121100977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368087723	chr3:121101005-121101006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs149403889	chr3:121101039-121101040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560723743	chr3:121101041-121101042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs549733569	chr3:121101075-121101076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569786021	chr3:121101082-121101083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371991146	chr3:121101083-121101084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571697876	chr3:121101108-121101109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs61796942	chr3:121101112-121101113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182884315	chr3:121101114-121101115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs557608022	chr3:121101120-121101121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs577793253	chr3:121101154-121101155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188587534	chr3:121101220-121101221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549496282	chr3:121101269-121101270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563628971	chr3:121101271-121101272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs146968743	chr3:121101326-121101327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113180957	chr3:121101329-121101330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs144762765	chr3:121101356-121101357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551994466	chr3:121101372-121101373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs116613517	chr3:121101423-121101424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572243404	chr3:121101425-121101426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Developmental delay	22180640	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
lymphocytic leukemia	21291569	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Autism	22241247	CNVD
Pancreatic cancer	17952125	CNVD
Bipolar disorder	17953491	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Glioma	20126413	CNVD

Chromatin state (count:4310 , 50 per page) page: 1 2 3 4 5 6 7 ... 87

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121093000-121117000	Weak transcription	Ovary	ovary
2	chr3:121099400-121102800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:121099800-121101800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:121102800-121103000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:121116800-121118000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:121117000-121117400	Enhancers	Ovary	ovary
7	chr3:121117000-121117400	Enhancers	HUVEC	blood vessel
8	chr3:121117200-121117600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:121117400-121139400	Weak transcription	Ovary	ovary
10	chr3:121129000-121129200	Enhancers	GM12878-XiMat	blood
11	chr3:121129200-121148800	Weak transcription	GM12878-XiMat	blood
12	chr3:121130400-121130800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:121130400-121130800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:121130400-121130800	Enhancers	HUVEC	blood vessel
15	chr3:121134200-121152600	Weak transcription	Hela-S3	cervix
16	chr3:121134400-121134600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:121134600-121146400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:121135400-121141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:121135800-121139600	Weak transcription	Brain Germinal Matrix	brain
20	chr3:121135800-121148600	Weak transcription	Thymus	Thymus
21	chr3:121135800-121149000	Weak transcription	A549	lung
22	chr3:121137000-121137200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:121137200-121137400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:121137400-121142200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:121137600-121145800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:121137800-121148800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:121139000-121145800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:121139200-121150600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:121139200-121186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:121139400-121147400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:121140000-121143600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:121140200-121149000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:121140600-121144600	Weak transcription	Dnd41	blood
34	chr3:121140600-121147000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:121140600-121150800	Weak transcription	HSMM	muscle
36	chr3:121140600-121170800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:121140800-121148400	Weak transcription	Fetal Thymus	thymus
38	chr3:121140800-121149000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:121140800-121150800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr3:121140800-121151400	Weak transcription	HepG2	liver
41	chr3:121141000-121148800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:121141200-121141600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:121141200-121186000	Weak transcription	NHEK	skin
44	chr3:121141400-121143000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:121141600-121141800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:121141600-121145200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:121141600-121147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:121141600-121148600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr3:121141800-121146800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:121141800-121147200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links