Variant report

Variant	nsv999877
Chromosome Location	chr3:86704171-86795449
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
2	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
3	lnc-CHMP2B-4	chr3:86790896-86791074	l_2406_chr3:86790895-86851827_testes
4	lnc-CHMP2B-2	chr3:86708206-86708384	XLOC_002725
5	lnc-CHMP2B-2	chr3:86766575-86766677	NONHSAT090674
6	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
7	lnc-CHMP2B-2	chr3:86768368-86768678	XLOC_002725
8	lnc-CHMP2B-2	chr3:86768368-86769064	XLOC_002725
9	lnc-CHMP2B-2	chr3:86708291-86708384	NONHSAT090678
10	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
11	lnc-CHMP2B-2	chr3:86729265-86729335	XLOC_002725
12	lnc-CHMP2B-2	chr3:86786328-86786371	NONHSAT090678
13	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
14	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
15	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
16	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
17	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
18	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
19	lnc-CHMP2B-2	chr3:86768367-86769064	NONHSAT090674
20	lnc-CHMP2B-2	chr3:86769945-86770054	XLOC_002725
21	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
22	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
23	lnc-CHMP2B-2	chr3:86708205-86708384	NONHSAT090674
24	lnc-CHMP2B-2	chr3:86766576-86766677	NONHSAT090678
25	lnc-CHMP2B-2	chr3:86729264-86729335	NONHSAT090674
26	lnc-CHMP2B-2	chr3:86760799-86760938	NONHSAT090674
27	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
28	lnc-CHMP2B-2	chr3:86771630-86771837	NONHSAT090674
29	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
30	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
31	lnc-CHMP2B-2	chr3:86769940-86770054	NONHSAT090674

No data

Variant related genes	Relation type
MRPL42	miRNA target sites
PLOD3	miRNA target sites
MCL1	miRNA target sites
AHR	miRNA target sites
C14orf178	miRNA target sites
POLA1	miRNA target sites
C15orf57	miRNA target sites
ZFYVE27	miRNA target sites
TRIM8	miRNA target sites
PTEN	miRNA target sites
LCLAT1	miRNA target sites

Extended variants
information (count: 881 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:881 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190477135	chr3:86704217-86704218	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs555923670	chr3:86704263-86704264	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs574078080	chr3:86704279-86704280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs535105997	chr3:86704283-86704284	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs181604214	chr3:86704303-86704304	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs76217771	chr3:86704330-86704331	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562963507	chr3:86704423-86704424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368730589	chr3:86704431-86704432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs531890315	chr3:86704432-86704433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187210127	chr3:86704449-86704450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs564265659	chr3:86704464-86704465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs140744406	chr3:86704474-86704475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs78616724	chr3:86704533-86704534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112368020	chr3:86704567-86704568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372618914	chr3:86704569-86704570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562070919	chr3:86704616-86704617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561907003	chr3:86704619-86704620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528972524	chr3:86704662-86704663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372639791	chr3:86704699-86704700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs558923920	chr3:86704702-86704703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111519589	chr3:86704754-86704755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532724560	chr3:86704802-86704803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551345961	chr3:86704804-86704805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs527698028	chr3:86704823-86704824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570298498	chr3:86704824-86704825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113056337	chr3:86704928-86704929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs537727226	chr3:86705015-86705016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs115493572	chr3:86705060-86705061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567813743	chr3:86705062-86705063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535127125	chr3:86705226-86705227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144456529	chr3:86705244-86705245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377095113	chr3:86705261-86705262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570680825	chr3:86705294-86705295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs578138474	chr3:86705309-86705310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs369414870	chr3:86705328-86705329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs377444762	chr3:86705341-86705342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs539083188	chr3:86705345-86705346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557303384	chr3:86705406-86705407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs4473555	chr3:86705427-86705428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543773005	chr3:86705471-86705472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192139809	chr3:86705486-86705487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555296727	chr3:86705494-86705495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs4423767	chr3:86705505-86705506	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs4613455	chr3:86705508-86705509	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs182662941	chr3:86705535-86705536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532858938	chr3:86705620-86705621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538413369	chr3:86705661-86705662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs144136129	chr3:86705688-86705689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs544705124	chr3:86705698-86705699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs371089282	chr3:86705703-86705704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86700800-86708200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86701800-86704400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:86703000-86707200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:86703200-86704200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:86704200-86704400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:86707200-86708400	Enhancers	Brain Germinal Matrix	brain
7	chr3:86707800-86708400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:86720600-86721600	Enhancers	Fetal Intestine Large	intestine
9	chr3:86722200-86722800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:86742400-86742600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:86742600-86742800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:86742800-86743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:86743200-86743800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:86743200-86744000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:86743400-86743600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:86743400-86743600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:86743600-86744400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:86743600-86744800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:86743800-86749800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:86744400-86745000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:86744400-86745400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:86744800-86745000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:86745000-86745800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr3:86745000-86746000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr3:86745000-86746000	Active TSS	H9 Cell Line	embryonic stem cell
26	chr3:86745000-86746000	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr3:86745000-86746000	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr3:86745000-86746200	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr3:86745200-86746000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr3:86745400-86745600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:86745400-86745800	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr3:86746800-86747000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr3:86763600-86764200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr3:86780600-86781000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:86781000-86782400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:86782400-86782600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:86782600-86782800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:86792200-86792600	Enhancers	Brain Germinal Matrix	brain
39	chr3:86792600-86793400	Weak transcription	Brain Germinal Matrix	brain
40	chr3:86792800-86794600	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr3:86793400-86794400	Enhancers	Brain Germinal Matrix	brain

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