The 2.0 version of rSNPBase

Variant report

Variant rs10000457
Chromosome Location chr4:54421539-54421540
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54384600-54424000 Weak transcription Esophagus oesophagus
2 chr4:54390400-54430400 Weak transcription Stomach Mucosa stomach
3 chr4:54400600-54424400 Weak transcription Fetal Intestine Large intestine
4 chr4:54404200-54424400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr4:54409200-54427000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr4:54412200-54442400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr4:54413200-54424000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr4:54413800-54426000 Weak transcription Right Ventricle heart
9 chr4:54414400-54422400 Weak transcription Left Ventricle heart
10 chr4:54416000-54438000 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr4:54418600-54424000 Weak transcription Fetal Intestine Small intestine
12 chr4:54419200-54421600 Enhancers Placenta Placenta
13 chr4:54419200-54424600 Active TSS Brain Inferior Temporal Lobe brain
14 chr4:54419400-54424400 Active TSS Brain Angular Gyrus brain
15 chr4:54419800-54422400 Enhancers Fetal Brain Male brain
16 chr4:54419800-54430400 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr4:54420000-54424600 Weak transcription H9 Cell Line embryonic stem cell
18 chr4:54420000-54424800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
19 chr4:54420000-54437600 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr4:54420200-54421600 Enhancers Pancreas Pancrea
21 chr4:54420400-54421600 Enhancers Fetal Lung lung
22 chr4:54420400-54421600 Enhancers Fetal Muscle Leg muscle
23 chr4:54420400-54422600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr4:54420600-54422600 Enhancers NHEK skin
25 chr4:54420600-54422800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr4:54421000-54421600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr4:54421000-54421600 Enhancers Aorta Aorta
28 chr4:54421000-54421600 Enhancers Ovary ovary
29 chr4:54421000-54421600 Enhancers HUVEC blood vessel
30 chr4:54421000-54422000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr4:54421000-54422000 Enhancers Liver Liver
32 chr4:54421000-54422800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr4:54421000-54424400 Active TSS Brain Anterior Caudate brain
34 chr4:54421000-54424400 Enhancers HMEC breast
35 chr4:54421000-54424800 Active TSS Fetal Brain Female brain
36 chr4:54421000-54424800 Enhancers Fetal Heart heart
37 chr4:54421200-54421600 Enhancers Right Atrium heart
38 chr4:54421200-54421600 Enhancers Skeletal Muscle Male skeletal muscle
39 chr4:54421200-54422400 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr4:54421200-54423800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr4:54421200-54424400 Active TSS Brain Cingulate Gyrus brain
42 chr4:54421200-54424400 Active TSS Brain Hippocampus Middle brain
43 chr4:54421400-54421600 Enhancers Spleen Spleen
44 chr4:54421400-54422400 Enhancers HSMMtube muscle
45 chr4:54421400-54423400 Weak transcription Muscle Satellite Cultured Cells --
46 chr4:54421400-54423400 Weak transcription Brain Germinal Matrix brain
47 chr4:54421400-54423800 Weak transcription HSMM muscle
48 chr4:54421400-54424000 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr4:54421400-54424000 Weak transcription Adipose Nuclei Adipose
50 chr4:54421400-54424000 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015