Variant report

Variant	rs10000569
Chromosome Location	chr4:7804470-7804471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7804029..7806912-chr4:7851204..7853700,2	MCF-7	breast:
2	chr4:7803065..7804892-chr4:7807691..7809470,2	K562	blood:
3	chr4:7803065..7805141-chr4:7807691..7809396,2	K562	blood:
4	chr4:7804324..7807098-chr4:7992889..7994621,2	MCF-7	breast:
5	chr4:7044398..7046569-chr4:7804109..7805802,2	K562	blood:
6	chr4:7771806..7772761-chr4:7803548..7804554,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173011	Chromatin interaction
ENSG00000173013	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004558	0.83[ASN][1000 genomes]
rs10022249	0.83[ASN][1000 genomes]
rs10025396	0.83[ASN][1000 genomes]
rs10031989	0.83[ASN][1000 genomes]
rs10050114	0.83[ASN][1000 genomes]
rs10937858	0.83[ASN][1000 genomes]
rs11944501	0.83[ASN][1000 genomes]
rs12501412	0.83[ASN][1000 genomes]
rs12503512	0.83[ASN][1000 genomes]
rs16841116	0.83[ASN][1000 genomes]
rs16841207	0.83[ASN][1000 genomes]
rs28406288	0.83[ASN][1000 genomes]
rs28429656	0.83[ASN][1000 genomes]
rs28726367	0.83[ASN][1000 genomes]
rs28759100	0.83[ASN][1000 genomes]
rs4689857	0.83[ASN][1000 genomes]
rs4689858	0.83[ASN][1000 genomes]
rs73206599	0.83[ASN][1000 genomes]
rs73208810	0.83[ASN][1000 genomes]
rs7356232	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1006642	chr4:7786980-7811291	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7762000-7805800	Weak transcription	Stomach Mucosa	stomach
2	chr4:7770800-7828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:7776400-7806800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:7781600-7807400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:7783800-7806200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:7784000-7821200	Weak transcription	Small Intestine	intestine
7	chr4:7787000-7829400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:7789200-7806600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:7791000-7806600	Weak transcription	Psoas Muscle	Psoas
10	chr4:7791000-7829400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:7791400-7806600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:7797000-7807000	Weak transcription	Liver	Liver
13	chr4:7798200-7807200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:7800200-7807200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:7800600-7805000	Weak transcription	Primary T cells from cord blood	blood
16	chr4:7800600-7806200	Weak transcription	Fetal Thymus	thymus
17	chr4:7800600-7828800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:7801400-7807200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:7801400-7807400	Weak transcription	Right Ventricle	heart
20	chr4:7801800-7807400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:7802000-7806200	Weak transcription	Fetal Brain Male	brain
22	chr4:7802000-7807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:7802000-7807200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:7802000-7807800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:7802200-7805600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:7802200-7805600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:7802200-7806200	Weak transcription	Brain Substantia Nigra	brain
28	chr4:7802200-7819800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:7802400-7804800	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:7802400-7805600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:7802400-7806000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:7802400-7806200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr4:7802400-7806600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:7802400-7806800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr4:7802400-7812400	Weak transcription	Spleen	Spleen
36	chr4:7802600-7804600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:7802600-7806000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:7802600-7806000	Weak transcription	Adipose Nuclei	Adipose
39	chr4:7802600-7806200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:7802600-7806400	Weak transcription	Fetal Brain Female	brain
41	chr4:7802600-7806600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:7802600-7807200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr4:7802600-7807400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:7802600-7808000	Weak transcription	Gastric	stomach
45	chr4:7802600-7809600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:7802600-7810400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr4:7802800-7804800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:7802800-7804800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:7802800-7804800	Weak transcription	HMEC	breast
50	chr4:7802800-7805600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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