The 2.0 version of rSNPBase
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Variant report
Variant
rs10001386
Chromosome Location
chr4:171384420-171384421
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-CLCN3-10
chr4:171384331-171384509
l_2774_chr4:171384330-171431550_prostate
No data
No data
No data
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs28827030
1.00[AFR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv432673
chr4:171340897-171423121
Active TSS Enhancers Flanking Active TSS Weak transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
1 gene(s)
inside rSNPs
diseases
2
nsv968069
chr4:171381804-171396858
Enhancers Weak transcription
lncRNA
n/a
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
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dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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