Variant report

Variant	rs10001475
Chromosome Location	chr4:21894007-21894008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10000092	0.96[YRI][hapmap]
rs10006654	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10023378	0.88[YRI][hapmap]
rs10155094	0.92[YRI][hapmap]
rs12640849	0.84[YRI][hapmap]
rs1513566	0.92[YRI][hapmap]
rs16872023	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1913335	0.96[YRI][hapmap]
rs28393680	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28521854	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28542864	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28712064	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6823352	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21890600-21894600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:21890600-21894800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:21891200-21899600	Weak transcription	HMEC	breast
4	chr4:21891400-21894600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:21891600-21894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:21893200-21899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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