Variant report

Variant	rs10001533
Chromosome Location	chr4:99568314-99568315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99465722..99468319-chr4:99566226..99568875,2	MCF-7	breast:
2	chr4:99566031..99568525-chr4:99568795..99571513,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6829297	1.00[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99548000-99569200	Weak transcription	Gastric	stomach
2	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
3	chr4:99552600-99569600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:99552800-99569200	Weak transcription	Fetal Stomach	stomach
5	chr4:99554200-99569200	Weak transcription	Spleen	Spleen
6	chr4:99560200-99569200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:99562000-99569200	Weak transcription	Fetal Brain Male	brain
8	chr4:99564000-99571600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:99564200-99568400	Enhancers	Thymus	Thymus
10	chr4:99564200-99569200	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:99564200-99570400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:99564400-99575600	Weak transcription	Fetal Kidney	kidney
13	chr4:99564600-99569400	Weak transcription	Fetal Heart	heart
14	chr4:99564800-99568400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:99564800-99568400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:99565200-99568400	Weak transcription	HSMM	muscle
17	chr4:99565200-99568600	Weak transcription	HSMMtube	muscle
18	chr4:99565200-99569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:99565200-99569200	Weak transcription	NHLF	lung
20	chr4:99565200-99569400	Weak transcription	HMEC	breast
21	chr4:99565200-99571200	Weak transcription	A549	lung
22	chr4:99565200-99571200	Weak transcription	NHEK	skin
23	chr4:99565200-99571400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:99565800-99571200	Enhancers	Brain Anterior Caudate	brain
27	chr4:99565800-99571200	Enhancers	Brain Substantia Nigra	brain
28	chr4:99566000-99569400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:99566000-99570600	Enhancers	Brain Hippocampus Middle	brain
30	chr4:99566000-99571200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:99566000-99575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:99566200-99569200	Weak transcription	Fetal Thymus	thymus
33	chr4:99566400-99568400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:99566400-99569800	Enhancers	Brain Germinal Matrix	brain
35	chr4:99566800-99569400	Weak transcription	NH-A	brain
36	chr4:99566800-99569800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr4:99566800-99570000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:99567000-99571000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:99567000-99571000	Enhancers	HUVEC	blood vessel
40	chr4:99567400-99569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:99567400-99569400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:99567400-99570200	Enhancers	Brain Angular Gyrus	brain
43	chr4:99567600-99569200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:99567600-99569200	Weak transcription	Ovary	ovary
45	chr4:99567600-99574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:99567600-99574400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:99567600-99574800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:99567800-99569200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:99568000-99569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:99568000-99570600	Enhancers	Muscle Satellite Cultured Cells	--

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