Variant report

Variant	rs10004347
Chromosome Location	chr4:150986249-150986250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150986162..150988706-chr4:150989550..150991461,2	MCF-7	breast:
2	chr4:150979256..150981636-chr4:150983674..150986662,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10000923	0.91[EUR][1000 genomes]
rs10002404	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs10003178	0.94[ASN][1000 genomes]
rs10004630	0.92[ASN][1000 genomes]
rs10005992	0.92[ASN][1000 genomes]
rs10011368	1.00[ASN][1000 genomes]
rs10014161	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs10014266	1.00[ASN][1000 genomes]
rs10016602	0.95[EUR][1000 genomes]
rs10018922	0.94[ASN][1000 genomes]
rs10022936	1.00[ASN][1000 genomes]
rs10024397	0.91[EUR][1000 genomes]
rs10024701	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10026506	1.00[ASN][1000 genomes]
rs10027662	0.89[ASN][1000 genomes]
rs10031412	0.94[ASN][1000 genomes]
rs10031447	0.91[EUR][1000 genomes]
rs10440445	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11721351	0.91[EUR][1000 genomes]
rs11726792	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11728756	0.91[EUR][1000 genomes]
rs12502816	0.91[EUR][1000 genomes]
rs12503886	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs12503967	0.91[EUR][1000 genomes]
rs13435543	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs28360726	0.89[ASN][1000 genomes]
rs28374205	0.94[ASN][1000 genomes]
rs28392881	0.89[ASN][1000 genomes]
rs28397206	0.89[ASN][1000 genomes]
rs28413051	0.94[ASN][1000 genomes]
rs28416593	0.86[ASN][1000 genomes]
rs28423983	1.00[ASN][1000 genomes]
rs28439804	0.89[ASN][1000 genomes]
rs28470198	0.91[EUR][1000 genomes]
rs28489242	0.91[EUR][1000 genomes]
rs28504590	0.91[EUR][1000 genomes]
rs28513621	0.94[ASN][1000 genomes]
rs28555093	0.91[EUR][1000 genomes]
rs28559901	0.86[ASN][1000 genomes]
rs28581399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28642700	0.81[ASN][1000 genomes]
rs28644462	0.92[EUR][1000 genomes]
rs28654919	0.89[ASN][1000 genomes]
rs28665284	0.81[ASN][1000 genomes]
rs28714207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28733182	0.92[EUR][1000 genomes]
rs28735454	1.00[ASN][1000 genomes]
rs28781622	0.91[EUR][1000 genomes]
rs28840424	0.91[EUR][1000 genomes]
rs28887006	0.89[ASN][1000 genomes]
rs28896206	0.89[ASN][1000 genomes]
rs34368156	0.88[EUR][1000 genomes]
rs34450486	0.91[EUR][1000 genomes]
rs35939331	0.91[EUR][1000 genomes]
rs4259040	0.94[ASN][1000 genomes]
rs4270569	0.81[CEU][hapmap]
rs4339189	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4353883	0.82[ASW][hapmap]
rs4356899	0.94[ASN][1000 genomes]
rs4358376	0.91[EUR][1000 genomes]
rs4405992	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs4414936	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4422402	0.89[EUR][1000 genomes]
rs4423856	1.00[ASN][1000 genomes]
rs4429716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4459971	1.00[ASN][1000 genomes]
rs4481220	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs4530613	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4546227	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4583735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616733	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4619871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4631016	1.00[ASN][1000 genomes]
rs4635802	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4640652	1.00[CEU][hapmap]
rs4835619	0.81[CEU][hapmap]
rs56150320	0.81[ASN][1000 genomes]
rs56227408	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57168672	0.81[ASN][1000 genomes]
rs60160057	0.94[ASN][1000 genomes]
rs60356991	0.91[EUR][1000 genomes]
rs61361070	0.94[ASN][1000 genomes]
rs62338171	0.91[EUR][1000 genomes]
rs62339860	1.00[ASN][1000 genomes]
rs62339861	1.00[ASN][1000 genomes]
rs62339874	1.00[ASN][1000 genomes]
rs62339875	1.00[ASN][1000 genomes]
rs62339876	1.00[ASN][1000 genomes]
rs62339877	1.00[ASN][1000 genomes]
rs62339878	1.00[ASN][1000 genomes]
rs62339880	1.00[ASN][1000 genomes]
rs62339909	0.89[ASN][1000 genomes]
rs62339911	0.91[EUR][1000 genomes]
rs62341684	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62341686	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818273	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6848344	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7436161	0.91[EUR][1000 genomes]
rs7659009	1.00[ASN][1000 genomes]
rs7665011	1.00[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs7668293	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7689735	0.89[EUR][1000 genomes]
rs7692823	0.91[EUR][1000 genomes]
rs9307863	0.94[ASN][1000 genomes]
rs9307864	0.92[EUR][1000 genomes]
rs9307865	1.00[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs9307866	1.00[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs9307867	0.91[EUR][1000 genomes]
rs9784426	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9968348	0.84[ASN][1000 genomes]
rs9968350	0.91[EUR][1000 genomes]
rs9968351	0.89[ASN][1000 genomes]
rs9968416	0.91[EUR][1000 genomes]
rs9968430	0.91[EUR][1000 genomes]
rs9968497	0.91[EUR][1000 genomes]
rs9985766	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9986068	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs9992090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9996035	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150983000-150990800	Weak transcription	NHDF-Ad	bronchial
2	chr4:150984800-150994000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:150985000-150989000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:150985200-150989400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:150985600-150989200	Weak transcription	Primary monocytes fromperipheralblood	blood

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