Variant report

Variant	rs10004909
Chromosome Location	chr4:143470229-143470230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:143470148..143471805-chr4:143527645..143530325,2	MCF-7	breast:
2	chr4:143422833..143425725-chr4:143470115..143471682,2	MCF-7	breast:
3	chr4:143451539..143454827-chr4:143468974..143471578,3	MCF-7	breast:
4	chr4:143390493..143399629-chr4:143464669..143473703,24	MCF-7	breast:
5	chr4:143455514..143457916-chr4:143469730..143472176,3	MCF-7	breast:
6	chr4:143436234..143437895-chr4:143469778..143471517,2	MCF-7	breast:
7	chr4:143469458..143471257-chr4:143473239..143475404,2	MCF-7	breast:
8	chr4:143459017..143460718-chr4:143467557..143470331,2	MCF-7	breast:
9	chr4:143469197..143474225-chr4:143534708..143538333,6	MCF-7	breast:
10	chr4:143469254..143471063-chr4:143535925..143538743,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1425521	1.00[ASN][1000 genomes]
rs6537111	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:143463000-143472200	Weak transcription	Aorta	Aorta
3	chr4:143465200-143470600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:143465600-143470400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:143465600-143470800	Weak transcription	Stomach Mucosa	stomach
6	chr4:143465600-143472800	Weak transcription	Fetal Lung	lung
7	chr4:143465800-143470800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:143466000-143470400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:143466000-143470800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:143466000-143471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:143466200-143470600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:143466600-143471000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:143467800-143470400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:143468200-143470600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:143468400-143470400	Enhancers	HMEC	breast
16	chr4:143468400-143473400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:143468600-143472600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:143468600-143473200	Enhancers	Fetal Intestine Small	intestine
19	chr4:143468800-143480000	Weak transcription	Left Ventricle	heart
20	chr4:143469000-143470800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:143469000-143473400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:143469200-143472600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:143469400-143472400	Weak transcription	Small Intestine	intestine
24	chr4:143469400-143477200	Weak transcription	Psoas Muscle	Psoas
25	chr4:143469600-143470600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:143469600-143470600	Weak transcription	Osteobl	bone
27	chr4:143469600-143471200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:143469600-143472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:143469800-143470400	Weak transcription	Fetal Heart	heart
30	chr4:143469800-143470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:143469800-143471000	Weak transcription	NHDF-Ad	bronchial
32	chr4:143470000-143473200	Enhancers	NH-A	brain
33	chr4:143470200-143471400	Enhancers	A549	lung
34	chr4:143470200-143471600	Flanking Active TSS	NHEK	skin
35	chr4:143470200-143472600	Enhancers	Fetal Intestine Large	intestine
36	chr4:143470200-143472800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:143470200-143473600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:143470200-143474800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr4:143470200-143477400	Enhancers	Primary T helper cells fromperipheralblood	blood

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