Variant report

Variant	rs10005140
Chromosome Location	chr4:22365603-22365604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10025938	1.00[EUR][1000 genomes]
rs28380483	1.00[ASN][1000 genomes]
rs28396498	1.00[EUR][1000 genomes]
rs28529338	1.00[ASN][1000 genomes]
rs28759515	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28885729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697295	0.83[EUR][1000 genomes]
rs57887864	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855444	1.00[EUR][1000 genomes]
rs73800904	1.00[EUR][1000 genomes]
rs7676386	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991628	0.93[AFR][1000 genomes]
rs9993654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9993802	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22329000-22389400	Weak transcription	Pancreas	Pancrea
2	chr4:22336600-22385400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:22354000-22378200	Weak transcription	Aorta	Aorta
4	chr4:22362400-22366400	Weak transcription	Ovary	ovary
5	chr4:22364000-22365800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:22364000-22366000	Enhancers	NHEK	skin
7	chr4:22364000-22366200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:22364000-22366400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:22364200-22366000	Enhancers	HMEC	breast
10	chr4:22364400-22366600	Enhancers	Osteobl	bone
11	chr4:22364800-22366400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:22365000-22366400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:22365400-22365800	Enhancers	Fetal Brain Male	brain
14	chr4:22365600-22386800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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