Variant report

Variant	rs10005307
Chromosome Location	chr4:16140443-16140444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28613549	1.00[AMR][1000 genomes]
rs9985983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16128200-16142600	Weak transcription	Right Atrium	heart
2	chr4:16136400-16144600	Enhancers	Fetal Muscle Leg	muscle
3	chr4:16137400-16144400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:16137600-16140800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:16137600-16141000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:16138000-16140800	Enhancers	HepG2	liver
7	chr4:16138800-16140600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:16138800-16141400	Weak transcription	Fetal Stomach	stomach
9	chr4:16139200-16143200	Weak transcription	Placenta	Placenta
10	chr4:16140000-16140600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:16140200-16140600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:16140400-16141800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr4:16140400-16144000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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