Variant report

Variant	rs10006715
Chromosome Location	chr4:110955011-110955012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17320841	0.90[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28603013	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4698805	0.80[EUR][1000 genomes]
rs56357075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6845765	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6854522	0.80[EUR][1000 genomes]
rs7667674	0.98[EUR][1000 genomes]
rs9030	0.81[CEU][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10006715	RRH	cis	cerebellum	SCAN
rs10006715	GAR1	cis	cerebellum	SCAN
rs10006715	CYP2U1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110953200-110958000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:110953400-110955600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:110953400-110955800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:110953400-110958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:110953600-110955800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:110953600-110956400	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:110953800-110955800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:110954000-110955200	Weak transcription	Fetal Thymus	thymus
9	chr4:110954000-110955400	Enhancers	Primary B cells from cord blood	blood
10	chr4:110954400-110955400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:110954600-110955200	Enhancers	Fetal Stomach	stomach
12	chr4:110954800-110955600	Flanking Active TSS	GM12878-XiMat	blood
13	chr4:110955000-110955600	Enhancers	Liver	Liver
14	chr4:110955000-110955800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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