Variant report

Variant	rs10007001
Chromosome Location	chr4:94669706-94669707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001391	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10010340	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10010418	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10030034	0.88[ASN][1000 genomes]
rs1036640	0.80[ASN][1000 genomes]
rs1107026	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13129238	0.81[ASN][1000 genomes]
rs1371359	0.92[ASN][1000 genomes]
rs1439547	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439548	0.93[ASN][1000 genomes]
rs1439549	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1439556	0.94[ASN][1000 genomes]
rs1898904	0.83[ASN][1000 genomes]
rs1971120	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2196321	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4235049	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4692987	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6532429	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66471066	0.80[ASN][1000 genomes]
rs6837139	0.94[ASN][1000 genomes]
rs6840457	0.81[EUR][1000 genomes]
rs6846733	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6854885	0.80[ASN][1000 genomes]
rs7669564	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7677278	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7681855	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7682768	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7686079	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs874377	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94654400-94669800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:94666400-94670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:94667400-94670600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:94668600-94670000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:94668600-94670200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:94668600-94670600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:94668800-94670000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:94669400-94670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:94669400-94670800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:94669400-94670800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:94669400-94671200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:94669600-94669800	Active TSS	GM12878-XiMat	blood
13	chr4:94669600-94670800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:94669600-94670800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:94669600-94670800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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