Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10009979	0.83[ASN][1000 genomes]
rs10021032	0.83[ASN][1000 genomes]
rs10084895	0.83[ASN][1000 genomes]
rs10084947	0.83[ASN][1000 genomes]
rs11097386	0.82[ASN][1000 genomes]
rs11941949	0.91[ASN][1000 genomes]
rs12505204	0.83[ASN][1000 genomes]
rs12505322	0.90[ASN][1000 genomes]
rs12642295	0.83[ASN][1000 genomes]
rs13110968	0.98[ASN][1000 genomes]
rs13117830	0.93[ASN][1000 genomes]
rs17296189	0.83[ASN][1000 genomes]
rs28511876	0.83[ASN][1000 genomes]
rs28699218	0.83[ASN][1000 genomes]
rs36108466	0.87[ASN][1000 genomes]
rs4619859	0.83[ASN][1000 genomes]
rs4692991	0.81[ASN][1000 genomes]
rs4693340	0.91[ASN][1000 genomes]
rs4693343	0.81[ASN][1000 genomes]
rs58174947	0.91[ASN][1000 genomes]
rs66548721	0.86[ASN][1000 genomes]
rs732020	0.83[ASN][1000 genomes]
rs735256	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs893708	0.83[ASN][1000 genomes]
rs963026	0.83[ASN][1000 genomes]
rs9998217	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10011270	GRID2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94684200-94700800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:94684200-94706800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:94685800-94700400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:94688000-94700400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:94696600-94698000	Enhancers	NHEK	skin
6	chr4:94696800-94698200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:94697200-94698800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:94697400-94698000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:94697800-94698400	Enhancers	Colon Smooth Muscle	Colon
10	chr4:94697800-94698400	Flanking Active TSS	HMEC	breast
11	chr4:94697800-94698800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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