Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94630994..94631913-chr4:94685511..94686184,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10009979	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10021032	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10084895	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10084947	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11097386	0.80[AMR][1000 genomes]
rs12505322	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12642295	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13117830	0.81[ASN][1000 genomes]
rs17296189	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28699218	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4619859	0.81[EUR][1000 genomes]
rs4692991	0.80[EUR][1000 genomes]
rs4693343	0.81[EUR][1000 genomes]
rs6837139	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6848798	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs732020	0.81[EUR][1000 genomes]
rs893708	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs963026	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9993013	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9998217	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94684200-94700800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:94684200-94706800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:94685400-94685800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:94685400-94685800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:94685600-94685800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:94685600-94685800	Enhancers	Brain Angular Gyrus	brain
7	chr4:94685600-94685800	Enhancers	Brain Anterior Caudate	brain
8	chr4:94685600-94685800	Enhancers	Brain Cingulate Gyrus	brain
9	chr4:94685600-94685800	Enhancers	Fetal Brain Female	brain
10	chr4:94685600-94685800	Enhancers	Stomach Mucosa	stomach
11	chr4:94685600-94686000	Enhancers	Brain Substantia Nigra	brain
12	chr4:94685600-94686000	Enhancers	Fetal Kidney	kidney
13	chr4:94685600-94686200	Enhancers	Duodenum Mucosa	Duodenum
14	chr4:94685600-94686200	Enhancers	Fetal Brain Male	brain

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