Variant report

Variant	rs10013461
Chromosome Location	chr4:186726792-186726793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:186725458..186728361-chr4:186729374..186731858,3	K562	blood:
2	chr4:186717627..186720449-chr4:186725999..186727628,2	MCF-7	breast:
3	chr4:186725458..186728006-chr4:186729374..186731176,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28582258	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3902837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs6837795	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73873386	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73873394	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv1015931	chr4:186683165-186734480	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186714600-186729800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:186715200-186729800	Weak transcription	Ovary	ovary
3	chr4:186716200-186731800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:186717200-186730200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:186718200-186730400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:186718200-186730400	Weak transcription	Gastric	stomach
7	chr4:186719000-186729600	Weak transcription	Fetal Brain Female	brain
8	chr4:186719000-186731800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:186719400-186728600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:186720400-186728400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:186720800-186730200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:186722000-186729800	Weak transcription	Fetal Stomach	stomach
13	chr4:186722200-186728600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:186724200-186726800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:186724800-186731800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:186725600-186729600	Weak transcription	Fetal Kidney	kidney
17	chr4:186725600-186731800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:186726200-186727200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:186726400-186727400	Enhancers	Liver	Liver
20	chr4:186726400-186727600	Enhancers	Fetal Brain Male	brain
21	chr4:186726400-186733600	Active TSS	Right Atrium	heart
22	chr4:186726400-186733800	Active TSS	Right Ventricle	heart
23	chr4:186726600-186726800	Enhancers	Brain Germinal Matrix	brain
24	chr4:186726600-186726800	Flanking Active TSS	Left Ventricle	heart
25	chr4:186726600-186727000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr4:186726600-186727000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:186726600-186727200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr4:186726600-186727400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:186726600-186727400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:186726600-186727400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:186726600-186727400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:186726600-186727400	Enhancers	Fetal Muscle Leg	muscle
33	chr4:186726600-186727400	Enhancers	Pancreas	Pancrea
34	chr4:186726600-186727600	Enhancers	Stomach Mucosa	stomach
35	chr4:186726600-186728200	Active TSS	Fetal Heart	heart
36	chr4:186726600-186728800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links