Variant report

Variant	rs10014001
Chromosome Location	chr4:60209085-60209086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1106995	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11940449	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11943999	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2137020	0.85[AFR][1000 genomes]
rs2137021	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2137023	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2175439	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2341560	0.86[AFR][1000 genomes]
rs28713762	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61378191	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs991074	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997514	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879049	chr4:60164589-60216659	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10014001	COTL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60205600-60209400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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