Variant report

Variant	rs10014848
Chromosome Location	chr4:79167357-79167358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10010879	0.87[AFR][1000 genomes]
rs10013117	0.92[AFR][1000 genomes]
rs1378236	0.92[AFR][1000 genomes]
rs1378240	0.95[AFR][1000 genomes]
rs1580106	0.92[AFR][1000 genomes]
rs345505	0.89[AFR][1000 genomes]
rs369056	0.89[AFR][1000 genomes]
rs4859522	0.80[AFR][1000 genomes]
rs6533550	0.93[AFR][1000 genomes]
rs6533577	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79144200-79176000	Weak transcription	Psoas Muscle	Psoas
2	chr4:79144600-79179000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79154400-79173600	Weak transcription	HepG2	liver
4	chr4:79160400-79168800	Weak transcription	Fetal Lung	lung
5	chr4:79162800-79167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:79163600-79173600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:79166000-79172800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:79166200-79167400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:79166200-79167600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:79166200-79168600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:79166400-79168600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:79166400-79169000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:79166400-79172600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:79166600-79168200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:79166600-79168800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:79166600-79168800	Weak transcription	Fetal Heart	heart
17	chr4:79166600-79173400	Weak transcription	Fetal Intestine Large	intestine
18	chr4:79167000-79167600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:79167000-79168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:79167200-79167800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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