Variant report

Variant	rs10014995
Chromosome Location	chr4:186650131-186650132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:186642283..186645621-chr4:186649150..186653147,3	K562	blood:
2	chr4:186642780..186645447-chr4:186647072..186650843,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004511	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10014865	0.84[CEU][hapmap]
rs10017683	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10026539	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10434304	0.92[CEU][hapmap]
rs13127592	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13131969	0.84[CEU][hapmap];0.82[ASN][1000 genomes]
rs13132598	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13140562	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13140699	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13140805	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13147441	0.84[CEU][hapmap];0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs28367124	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28384265	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28523636	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28617776	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28755896	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9991266	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10014995	ODZ3	cis	cerebellum	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186622000-186651800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:186630000-186651600	Weak transcription	HSMM	muscle
3	chr4:186634400-186651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:186638600-186651600	Weak transcription	Psoas Muscle	Psoas
5	chr4:186639000-186651000	Enhancers	Fetal Heart	heart
6	chr4:186640800-186653600	Weak transcription	Fetal Intestine Large	intestine
7	chr4:186641400-186651600	Weak transcription	Right Ventricle	heart
8	chr4:186642200-186651600	Weak transcription	Spleen	Spleen
9	chr4:186642800-186651600	Weak transcription	Lung	lung
10	chr4:186642800-186657800	Weak transcription	Gastric	stomach
11	chr4:186643000-186651600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:186643000-186654000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:186643400-186651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:186643600-186650400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:186643800-186650600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:186643800-186657800	Weak transcription	Fetal Brain Female	brain
17	chr4:186644800-186651800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:186645200-186651600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:186645400-186651800	Weak transcription	Stomach Mucosa	stomach
20	chr4:186645600-186651600	Weak transcription	GM12878-XiMat	blood
21	chr4:186645800-186651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:186645800-186651600	Weak transcription	Right Atrium	heart
23	chr4:186645800-186651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:186646000-186651600	Weak transcription	Ovary	ovary
25	chr4:186646800-186653600	Weak transcription	HepG2	liver
26	chr4:186647000-186651000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr4:186648000-186650800	Enhancers	Aorta	Aorta
28	chr4:186648400-186650200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:186648400-186650600	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:186648400-186651200	Weak transcription	Fetal Stomach	stomach
31	chr4:186648400-186658800	Weak transcription	Brain Germinal Matrix	brain
32	chr4:186648600-186650200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:186648600-186650200	Weak transcription	NHDF-Ad	bronchial
34	chr4:186648600-186651600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:186648600-186651600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:186648600-186651800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:186648600-186652400	Weak transcription	Fetal Brain Male	brain
38	chr4:186648800-186650200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:186649000-186651600	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:186649000-186651800	Weak transcription	Brain Anterior Caudate	brain
41	chr4:186649200-186650200	Enhancers	Pancreas	Pancrea
42	chr4:186649200-186650800	Enhancers	Left Ventricle	heart
43	chr4:186649200-186653600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr4:186649200-186659000	Weak transcription	Fetal Kidney	kidney
45	chr4:186649400-186650200	Enhancers	Placenta	Placenta
46	chr4:186649400-186650400	Genic enhancers	HSMMtube	muscle
47	chr4:186649400-186650600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:186649600-186651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:186649600-186652200	Enhancers	HUVEC	blood vessel
50	chr4:186649800-186650800	Enhancers	Brain Cingulate Gyrus	brain

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