Variant report

Variant	rs10015117
Chromosome Location	chr4:160664070-160664071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12108371	0.86[EUR][1000 genomes]
rs13108598	0.98[ASN][1000 genomes]
rs13135771	0.93[ASN][1000 genomes]
rs17319860	0.86[EUR][1000 genomes]
rs4260490	0.98[ASN][1000 genomes]
rs4280695	0.98[ASN][1000 genomes]
rs4422371	0.98[ASN][1000 genomes]
rs4558823	0.98[ASN][1000 genomes]
rs56183049	0.85[ASN][1000 genomes]
rs6536467	0.98[ASN][1000 genomes]
rs7656318	0.98[ASN][1000 genomes]
rs7656981	0.98[ASN][1000 genomes]
rs7672324	0.98[ASN][1000 genomes]
rs7672522	0.98[ASN][1000 genomes]
rs7672862	0.98[ASN][1000 genomes]
rs7679504	0.98[ASN][1000 genomes]
rs9992728	0.98[ASN][1000 genomes]
rs9992918	0.98[ASN][1000 genomes]
rs9993406	0.93[ASN][1000 genomes]
rs9993480	0.98[ASN][1000 genomes]
rs9993571	0.93[ASN][1000 genomes]
rs9996294	0.91[ASN][1000 genomes]
rs9996302	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160657000-160669200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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