Variant report

Variant	rs10015240
Chromosome Location	chr4:166241366-166241367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166239806..166243936-chr4:166245094..166249086,6	K562	blood:
2	chr4:166241161..166246185-chr4:166246562..166251046,7	K562	blood:
3	chr4:166239973..166242709-chr4:166243762..166246150,2	K562	blood:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10009994	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10471096	0.81[EUR][1000 genomes]
rs13353543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28678193	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3756015	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57720293	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60759634	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536902	0.81[EUR][1000 genomes]
rs6536903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6828824	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7698056	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9685465	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166214400-166246600	Weak transcription	Placenta	Placenta
2	chr4:166219400-166246600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:166219400-166246600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:166219600-166246800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:166220000-166246600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:166220000-166247000	Weak transcription	Spleen	Spleen
7	chr4:166220000-166247400	Weak transcription	Fetal Stomach	stomach
8	chr4:166220000-166247800	Weak transcription	Right Ventricle	heart
9	chr4:166223400-166244800	Weak transcription	HUVEC	blood vessel
10	chr4:166223400-166246400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:166223400-166246600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:166223400-166246600	Weak transcription	Esophagus	oesophagus
13	chr4:166223400-166246600	Weak transcription	HSMM	muscle
14	chr4:166223400-166246600	Weak transcription	HSMMtube	muscle
15	chr4:166223400-166246800	Weak transcription	Ovary	ovary
16	chr4:166223400-166247400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:166223400-166247600	Weak transcription	Thymus	Thymus
18	chr4:166223400-166247800	Weak transcription	Aorta	Aorta
19	chr4:166223400-166248000	Weak transcription	Gastric	stomach
20	chr4:166223600-166246600	Weak transcription	GM12878-XiMat	blood
21	chr4:166223600-166247000	Weak transcription	Brain Anterior Caudate	brain
22	chr4:166223600-166247200	Weak transcription	Brain Angular Gyrus	brain
23	chr4:166223600-166247200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:166223600-166247400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:166223600-166247400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:166223600-166247600	Weak transcription	Fetal Lung	lung
27	chr4:166223800-166247600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:166224200-166247400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:166224200-166247600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:166224400-166247600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr4:166230000-166241800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:166230400-166245200	Weak transcription	NHEK	skin
33	chr4:166230400-166246400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:166230600-166244600	Weak transcription	Fetal Intestine Small	intestine
35	chr4:166230600-166245400	Weak transcription	HMEC	breast
36	chr4:166230800-166246600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:166230800-166246800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:166230800-166247000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:166230800-166247400	Weak transcription	Brain Germinal Matrix	brain
40	chr4:166230800-166247400	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:166231800-166246800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:166232000-166246600	Weak transcription	NH-A	brain
43	chr4:166232000-166247200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:166232000-166247200	Weak transcription	Brain Substantia Nigra	brain
45	chr4:166232800-166247200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:166233000-166243200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr4:166233000-166248000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:166233400-166246400	Weak transcription	HepG2	liver
49	chr4:166233400-166246600	Weak transcription	Pancreas	Pancrea
50	chr4:166233400-166247000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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